Detail information of GWHGAAZE032089


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263173.10PREDICTED: heparanase-like protein 3 [Vitis vinifera]
Swissprottr|Q9FZP1|HPSE3_ARATH0Heparanase-like protein 3 (Precursor)
trEMBLtr|A5C7G0|A5C7G0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN81917.1}
TAIR10AT5G34940.20glucuronidase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene7032233970327216-
GWHAAZE00000009mRNA7032233970327216-
GWHAAZE00000009exon7032233970322707-
GWHAAZE00000009exon7032278470322883-
GWHAAZE00000009exon7032341570323540-
GWHAAZE00000009exon7032363370323822-
GWHAAZE00000009exon7032439070324570-
GWHAAZE00000009exon7032486470324910-
GWHAAZE00000009exon7032523470325382-
GWHAAZE00000009exon7032547570325658-
GWHAAZE00000009exon7032586370325905-
GWHAAZE00000009exon7032684270327216-
GWHAAZE00000009five_prime_UTR7032707670327216-
GWHAAZE00000009CDS7032684270327075-
GWHAAZE00000009CDS7032586370325905-
GWHAAZE00000009CDS7032547570325658-
GWHAAZE00000009CDS7032523470325382-
GWHAAZE00000009CDS7032486470324910-
GWHAAZE00000009CDS7032439070324570-
GWHAAZE00000009CDS7032363370323822-
GWHAAZE00000009CDS7032341570323540-
GWHAAZE00000009CDS7032278470322883-
GWHAAZE00000009CDS7032233970322707-
Transcript Sequence

Network for GWHGAAZE032089

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03662.15Glyco_hydro_79n333495.40E-145
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07964HPSE Metabolic pathways map01100
Glycosaminoglycan degradationmap00531

Gene Ontology

GO term OntologyName
GO:0016020cellular_componentmembrane
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf146.327
SRR3591706second leaf21.900
SRR3591707mature leaf2.089
SRR3591708Shoot apex20.056
SRR3591709Stem206.331
SRR3591710White floral bud23.172
SRR3591711White flower8.888
SRR3591712Green floral bud13.584
SRR3591713Yellow flower1.462
SRP173429 SRR8316895Juvenile bud stage 54.956
SRR8316896Juvenile bud stage 27.882
SRR8316897Juvenile bud stage 11.307
SRR8316894Third green stage 5.473
SRR8316900Third green stage 10.722
SRR8316901Third green stage 12.544
SRR8316898Complete white stage 1.242
SRR8316899Complete white stage 3.919
SRR8316903Complete white stage 3.411
SRR8316902Silver flowering stage1.598
SRR8316904Silver flowering stage5.332
SRR8316905Silver flowering stage1.165
SRR8316906Gold flowering stage 4.664
SRR8316907Gold flowering stage 10.720
SRR8316908Gold flowering stage 6.047
SRP132670SRR6706286Control6.390
SRR6706287Light intensity 50%4.931
SRR6706288Light intensity 20%4.756
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.626
CNS0095593Slightly white alabastrum(diploid) 211.343
CNS0095594Slightly white alabastrum(diploid) 318.905
CNS0095595Whole white alabastrum(diploid) 27.373
CNS0095596Whole white alabastrum(diploid) 37.935
CNS0095597Whole white alabastrum(diploid) 45.504
CNS0095598Silvery flower (diploied) 14.991
CNS0095599Silvery flower (diploied) 24.775
CNS0095600Silvery flower (diploied) 34.952
CNS0095601Golden flower (diploid) 12.239
CNS0095602Golden flower (diploid) 21.894
CNS0095603Golden flower (diploid) 32.653
CNS0095604Slightly white alabastrum(tetraploid) 17.195
CNS0095605Slightly white alabastrum(tetraploid) 25.423
CNS0095606Slightly white alabastrum(tetraploid) 322.349
CNS0095607Whole white alabastrum(tetraploid) 12.251
CNS0095608Whole white alabastrum(tetraploid) 21.265
CNS0095609Whole white alabastrum(tetraploid) 38.976
CNS0095610Silvery flower (tetraploid) 13.073
CNS0095611Silvery flower (tetraploid) 24.384
CNS0095612Silvery flower (tetraploid) 312.802
CNS0095613Golden flower (tetraploid) 13.964
CNS0095614Golden flower (tetraploid) 22.471
CNS0095615Golden flower (tetraploid) 31.965
CRA001975CRR073297Stem 175.176
CRR073298Stem 234.279
CRR073299Stem 334.809
CRR073300Leaf 15.246
CRR073301Leaf 25.861
CRR073302Leaf 36.480
CRR073303Juvenile bud 12.501
CRR073304Juvenile bud 20.922
CRR073305Juvenile bud 31.857
CRR073306Third green 17.201
CRR073307Third green 212.978
CRR073308Third green 38.833
CRR073309Second white 18.575
CRR073310Second white 24.343
CRR073311Second white 36.351
CRR073312Silver flowering 15.521
CRR073313Silver flowering 24.146
CRR073314Silver flowering 36.359
CRR073315Gold flowering 11.815
CRR073316Gold flowering 22.274
CRR073317Gold flowering 31.357
CRR073318Tawny withering 155.843
CRR073319Tawny withering 233.311
CRR073320Tawny withering 376.612