Detail information of GWHGAAZE032046


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273755.10PREDICTED: SCY1-like protein 2 [Vitis vinifera]
COGYP_003702211.17E-11serine/threonine protein kinase with PASTA sensor(s)
Swissprottr|Q2QAV0|TIO_ARATH0.0000002Serine/threonine-protein kinase TIO
trEMBLtr|D7SN24|D7SN24_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17053.3}
TAIR10AT1G22870.10Protein kinase family protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6968015369697710-
GWHAAZE00000009mRNA6968015369697710-
GWHAAZE00000009exon6969721669697710-
GWHAAZE00000009exon6969604969696153-
GWHAAZE00000009exon6969552469695634-
GWHAAZE00000009exon6969470769694778-
GWHAAZE00000009exon6968953669689721-
GWHAAZE00000009exon6968901769689211-
GWHAAZE00000009exon6968887069688903-
GWHAAZE00000009exon6968704869687109-
GWHAAZE00000009exon6968684669686932-
GWHAAZE00000009exon6968518169685267-
GWHAAZE00000009exon6968346969683582-
GWHAAZE00000009exon6968287969683007-
GWHAAZE00000009exon6968182169681883-
GWHAAZE00000009exon6968148069681641-
GWHAAZE00000009exon6968125269681370-
GWHAAZE00000009exon6968015369681038-
GWHAAZE00000009CDS6969721669697710-
GWHAAZE00000009CDS6969604969696153-
GWHAAZE00000009CDS6969552469695634-
GWHAAZE00000009CDS6969470769694778-
GWHAAZE00000009CDS6968953669689721-
GWHAAZE00000009CDS6968901769689211-
GWHAAZE00000009CDS6968887069688903-
GWHAAZE00000009CDS6968704869687109-
GWHAAZE00000009CDS6968684669686932-
GWHAAZE00000009CDS6968518169685267-
GWHAAZE00000009CDS6968346969683582-
GWHAAZE00000009CDS6968287969683007-
GWHAAZE00000009CDS6968182169681883-
GWHAAZE00000009CDS6968148069681641-
GWHAAZE00000009CDS6968125269681370-
GWHAAZE00000009CDS6968015369681038-
Transcript Sequence

Network for GWHGAAZE032046

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1053631.10E-18
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilySCY1_SCYL2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.658
SRR3591706second leaf12.966
SRR3591707mature leaf9.883
SRR3591708Shoot apex12.724
SRR3591709Stem18.284
SRR3591710White floral bud28.758
SRR3591711White flower23.557
SRR3591712Green floral bud17.105
SRR3591713Yellow flower16.899
SRP173429 SRR8316895Juvenile bud stage 9.602
SRR8316896Juvenile bud stage 12.402
SRR8316897Juvenile bud stage 6.120
SRR8316894Third green stage 5.585
SRR8316900Third green stage 14.025
SRR8316901Third green stage 13.525
SRR8316898Complete white stage 6.506
SRR8316899Complete white stage 16.160
SRR8316903Complete white stage 17.904
SRR8316902Silver flowering stage7.627
SRR8316904Silver flowering stage12.250
SRR8316905Silver flowering stage6.009
SRR8316906Gold flowering stage 16.407
SRR8316907Gold flowering stage 13.810
SRR8316908Gold flowering stage 17.422
SRP132670SRR6706286Control12.289
SRR6706287Light intensity 50%13.383
SRR6706288Light intensity 20%13.451
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.037
CNS0095593Slightly white alabastrum(diploid) 27.279
CNS0095594Slightly white alabastrum(diploid) 35.804
CNS0095595Whole white alabastrum(diploid) 25.602
CNS0095596Whole white alabastrum(diploid) 35.206
CNS0095597Whole white alabastrum(diploid) 46.115
CNS0095598Silvery flower (diploied) 19.718
CNS0095599Silvery flower (diploied) 27.869
CNS0095600Silvery flower (diploied) 319.068
CNS0095601Golden flower (diploid) 18.168
CNS0095602Golden flower (diploid) 217.638
CNS0095603Golden flower (diploid) 317.055
CNS0095604Slightly white alabastrum(tetraploid) 18.621
CNS0095605Slightly white alabastrum(tetraploid) 25.901
CNS0095606Slightly white alabastrum(tetraploid) 318.682
CNS0095607Whole white alabastrum(tetraploid) 14.403
CNS0095608Whole white alabastrum(tetraploid) 24.145
CNS0095609Whole white alabastrum(tetraploid) 313.086
CNS0095610Silvery flower (tetraploid) 118.873
CNS0095611Silvery flower (tetraploid) 220.343
CNS0095612Silvery flower (tetraploid) 326.522
CNS0095613Golden flower (tetraploid) 19.821
CNS0095614Golden flower (tetraploid) 214.721
CNS0095615Golden flower (tetraploid) 317.298
CRA001975CRR073297Stem 116.754
CRR073298Stem 214.782
CRR073299Stem 311.877
CRR073300Leaf 118.100
CRR073301Leaf 217.454
CRR073302Leaf 310.873
CRR073303Juvenile bud 113.032
CRR073304Juvenile bud 211.902
CRR073305Juvenile bud 322.169
CRR073306Third green 112.949
CRR073307Third green 210.758
CRR073308Third green 312.666
CRR073309Second white 114.430
CRR073310Second white 215.881
CRR073311Second white 319.349
CRR073312Silver flowering 114.633
CRR073313Silver flowering 215.644
CRR073314Silver flowering 313.175
CRR073315Gold flowering 19.758
CRR073316Gold flowering 213.776
CRR073317Gold flowering 39.279
CRR073318Tawny withering 113.930
CRR073319Tawny withering 210.825
CRR073320Tawny withering 316.211