Gene detail

Detail information of GWHGAAZE032019

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011069876.1	0	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Sesamum indicum]
COG	YP_004335154.1	2E-22	serine/threonine protein kinase
Swissprot	tr\|Q9LSC2\|Y3589_ARATH	1E-113	PTI1-like tyrosine-protein kinase At3g15890
trEMBL	tr\|F6GXA4\|F6GXA4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44590.1}
TAIR10	AT1G52540.1	8E-96	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69106312	69109190	-
GWHAAZE00000009	mRNA	69106312	69109190	-
GWHAAZE00000009	exon	69106312	69107026	-
GWHAAZE00000009	exon	69107726	69107988	-
GWHAAZE00000009	exon	69108797	69108947	-
GWHAAZE00000009	exon	69109144	69109190	-
GWHAAZE00000009	CDS	69109144	69109190	-
GWHAAZE00000009	CDS	69108797	69108947	-
GWHAAZE00000009	CDS	69107726	69107988	-
GWHAAZE00000009	CDS	69106312	69107026	-

Transcript Sequence
>GWHTAAZE032057 ATGGGATCCTCCTTGAGTTGCTGTGGAGATGAGAAAGTTGATGAAGGGTCGATGACAGTGGGCGAAGGTAATACACCATGGAGAATATTCACATACAAAGAGTTGCATAGTGCTACAAATGGTTTTAGTGAGGAGAACAAGCTTGGAGAGGGAGGGTTTGGAAGTGTTTATTGGGGCAAAATTTCTGATGGCCTTCAGATAGCGGTGAAGAAACTGAAATCTATGAATTCAAAGGCGGAAATGGAATTTGCTGTGGAAGTAGAAGTTCTAGGTAGGGTACGACACAAGAACTTGTTGGGTCTAAGGGGATATTGCGCGGGGGCTGATCAACGACTAATCGTGTACGATTACATGCCTAATCTAAGTCTCCTCTCTCATCTCCACGGCCAATTTGCTAGTGATGTTCAACTTGACTGGAAAAAAAGAATCAAGGTTGCTATTGGCTCTGCTGAAGGCTTAATGTACCTACATCATGAAGTAACACCCCACATAATACACAGAGACATAAAGGCCAGCAATGTGCTATTGGACTCAAACTTTGAGCCACTAGTGGCTGACTTTGGGTTCGCCAAGCTAATACCAGATGGGGTTAGCCACATGACCACGAGGGTCAAGGGCACATTGGGCTACTTAGCCCCAGAGTATGCAATGTGGGGCAAAGTCTCCGAGAGTTGTGATGTTTATAGCTTTGGGATTCTTCTACTTGAGATATTAACAGGCCGAAAGCCTATCGAAAAACTCTCAGGTGGGGTTAAACGGACCATAACTGAATGGGCCGAGCCCTTGATCTTGAAAGGGCGGTTCAAGGACTTGGCAGACCCTAAGCTAAGAGGAAATTTCGACGAGAACCAGCTCAAAATGGCAATTAATGTGGCGGCCCTATGTGTGCAAAGCGAGCCTGATAAAAGGCCTACTATGAAGGAAGTGGTGGGGTTGTTAAAAGGGTATAATGAGCCTAAAGGTTATAAGAAGGTTATGCAAATGAGGCTTGAGAGTGTTAAGTATGGGGAGGATTTGATGGCGCTCGATCAAGCAAGTGATGAAGATGATGACGGTGGTGGCCATGGTGGTGGGGGAGATGAGAGTAGTGCTTATGGTGTTTTCGGTGCTATGGAAATGCAAAAGATGCAGGACCCGTATAAACGTTACGAGAACAGAAAGGGGAAAAAGGGATGA

Network for GWHGAAZE032019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	43	310	7.10E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.170
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.084
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.113
	SRR3591711	White flower	0.699
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.604
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.031
	SRR8316898	Complete white stage	0.185
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.174
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.159
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.052
	SRR8316907	Gold flowering stage	0.418
	SRR8316908	Gold flowering stage	0.086
SRP132670	SRR6706286	Control	0.081
	SRR6706287	Light intensity 50%	0.058
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.064
	CNS0095598	Silvery flower (diploied) 1	0.043
	CNS0095599	Silvery flower (diploied) 2	0.169
	CNS0095600	Silvery flower (diploied) 3	0.190
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.155
	CNS0095603	Golden flower (diploid) 3	0.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.058
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.187
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.041
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.154
	CNS0095610	Silvery flower (tetraploid) 1	2.148
	CNS0095611	Silvery flower (tetraploid) 2	0.287
	CNS0095612	Silvery flower (tetraploid) 3	0.774
	CNS0095613	Golden flower (tetraploid) 1	0.768
	CNS0095614	Golden flower (tetraploid) 2	1.837
	CNS0095615	Golden flower (tetraploid) 3	1.526
CRA001975	CRR073297	Stem 1	0.060
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.045
	CRR073308	Third green 3	0.141
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.152
	CRR073311	Second white 3	0.141
	CRR073312	Silver flowering 1	0.316
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.078
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.091
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.192
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000