Gene detail

Detail information of GWHGAAZE032018

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002534342.1	2.0332E-137	conserved hypothetical protein [Ricinus communis]
COG	YP_007037694.1	7E-10	Serine/threonine protein kinase
Swissprot	tr\|Q5XF57\|Y5576_ARATH	4E-101	Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBL	tr\|B9T7X3\|B9T7X3_RICCO	8E-138	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF28040.1}
TAIR10	AT5G57670.2	1E-80	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	69095434	69103587	-
GWHAAZE00000009	mRNA	69095434	69103587	-
GWHAAZE00000009	exon	69103452	69103587	-
GWHAAZE00000009	exon	69103185	69103336	-
GWHAAZE00000009	exon	69102715	69102833	-
GWHAAZE00000009	exon	69102503	69102627	-
GWHAAZE00000009	exon	69099965	69100219	-
GWHAAZE00000009	exon	69098249	69098457	-
GWHAAZE00000009	exon	69097659	69097808	-
GWHAAZE00000009	exon	69095434	69095577	-
GWHAAZE00000009	CDS	69103452	69103587	-
GWHAAZE00000009	CDS	69103185	69103336	-
GWHAAZE00000009	CDS	69102715	69102833	-
GWHAAZE00000009	CDS	69102503	69102627	-
GWHAAZE00000009	CDS	69099965	69100219	-
GWHAAZE00000009	CDS	69098249	69098457	-
GWHAAZE00000009	CDS	69097659	69097808	-
GWHAAZE00000009	CDS	69095434	69095577	-

Transcript Sequence
>GWHTAAZE032056 ATGATTCATTCATCTCCCGCAAAAGTCATACTCATAGGCATCTCTTTAGATTCACAAGATAGTGCCGAGCTCGTCTCTTGGGCAATTCGAACCCTAGCTCAGCCCAATGACACCGTGGTCGCCTTGCATGTTCTTGTGGCCGAAGGGATGAAGAAGCGAGTCGACCAAAAAAGAGAGGAGATTAAGAAGTGGAAATCTATTACAAAATATCAAACACAAATTCGTCAAGCAAAGGCCTTTGTTATAAATGTGATGGGGGAGTTTGCCGAGACTTGCCGGTCGAAGCAGGTAAATTTAGAGGCTAAAGTTGGGTTTAGCTCAAGTGTTGGAAAAGGACTAATTGAGGAAGCAAAAGGCATCTCAGCTGAATTTCTTCTCATTGGCAGCTCAAAGAACCCATCGAACAAAGTTTCGCACGAAACTACAAGATACTGTTTTGAGCATGCACCTGAAGGTTGTTCGATTGTCTTGGTTGGGAAATCTAAGCCTCCGCAACAAGATTTTTACTGCAATTCCATGCACTTCAAAGGTGATAATATTGTGGGAAGAGGAGGGTACTCAGAGGTATACAGGGGAGATCTTGAAAATGGGCATGAAATAGCAGTGAAAAGATTAGCAAAGGACAACAAAGATGAAAATAAAGAGAAGGAGTTTCTTGTGGAATTGGGAATAATTGGACATGTAAATCATCCAAATACAGCTAGCTTGGTTGGTTATTGCTTTGAAAATGGGCTTTATCTCGTCTTCAATTATTACTCAAATGGAACTCTCTCTTCTGCATTGCATGATTTTGGGCTAGCAAAATGGCTACCTAGCAAATGGACTCACCACGCTGCGATTCCAATTGAGGGCACGTTTGGATACTTAGCACCAGAGTACTTCGTTAATGGAATTGTTGATGAAAAAACTGATGTTTTTGCGTTTGGAATTCTTCTTCTAGAGATCATAACTGGTCGTAGGCCAGTTGACTCATCCAAACAAAGCCTTCTCCTGTGGGCAAAGCCCCTAATGGAATCTGAGAAGATAGAAGAACTAGCAGACCCAAATTTGGAAGGAAAATATGAGACGGAACAAATGCATAGATTAGTCCTCACTGCTTCCTATTGTGTTAGACAATCTTCAACTTGGCGCCCATCCATGACTGAGGTTTTACAGCTTCTAACTTATGGGCAAGGATTTGAGATGGGACAGAGTTGGAGATTACAAGAATCAGTAACAGAGGAGATAAATGATTACTCAATGATTTTTGGCTATGATCTTCCCTCGGATATTGCTTTGGAGGACCTTTAG

Network for GWHGAAZE032018

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	8	150	4.00E-09
PF07714.18	PK_Tyr_Ser-Thr	179	262	3.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.179
	SRR3591706	second leaf	1.567
	SRR3591707	mature leaf	0.051
	SRR3591708	Shoot apex	0.997
	SRR3591709	Stem	2.692
	SRR3591710	White floral bud	0.129
	SRR3591711	White flower	0.313
	SRR3591712	Green floral bud	0.198
	SRR3591713	Yellow flower	0.105
SRP173429	SRR8316895	Juvenile bud stage	0.220
	SRR8316896	Juvenile bud stage	0.696
	SRR8316897	Juvenile bud stage	0.229
	SRR8316894	Third green stage	0.323
	SRR8316900	Third green stage	0.177
	SRR8316901	Third green stage	0.691
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.127
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.146
	SRR6706287	Light intensity 50%	0.109
	SRR6706288	Light intensity 20%	0.164
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.014
	CNS0095593	Slightly white alabastrum(diploid) 2	0.253
	CNS0095594	Slightly white alabastrum(diploid) 3	0.325
	CNS0095595	Whole white alabastrum(diploid) 2	0.059
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.030
	CNS0095598	Silvery flower (diploied) 1	0.031
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.096
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.018
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.119
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.153
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.081
	CNS0095613	Golden flower (tetraploid) 1	0.045
	CNS0095614	Golden flower (tetraploid) 2	0.084
	CNS0095615	Golden flower (tetraploid) 3	0.036
CRA001975	CRR073297	Stem 1	0.176
	CRR073298	Stem 2	0.138
	CRR073299	Stem 3	0.136
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.190
	CRR073302	Leaf 3	0.108
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.005
	CRR073306	Third green 1	0.004
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.153
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.048
	CRR073318	Tawny withering 1	4.320
	CRR073319	Tawny withering 2	2.123
	CRR073320	Tawny withering 3	7.110