Detail information of GWHGAAZE031997


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270551.10PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Vitis vinifera]
COGYP_001193163.11E-45adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Swissprottr|B0F481|BIODA_ARATH07,8-diamino-pelargonic acid aminotransferase (Precursor)
trEMBLtr|D7SQ61|D7SQ61_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17792.3}
TAIR10AT5G57590.10adenosylmethionine-8-amino-7-oxononanoate transaminases

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6875834568769802-
GWHAAZE00000009mRNA6875834568769802-
GWHAAZE00000009exon6875834568758482-
GWHAAZE00000009exon6875924068759374-
GWHAAZE00000009exon6875964568759776-
GWHAAZE00000009exon6876004568760178-
GWHAAZE00000009exon6876069468760846-
GWHAAZE00000009exon6876093768761052-
GWHAAZE00000009exon6876211168762205-
GWHAAZE00000009exon6876426268764410-
GWHAAZE00000009exon6876555368765673-
GWHAAZE00000009exon6876583668765916-
GWHAAZE00000009exon6876637868766639-
GWHAAZE00000009exon6876724068767410-
GWHAAZE00000009exon6876846068768778-
GWHAAZE00000009exon6876936768769802-
GWHAAZE00000009CDS6876936768769802-
GWHAAZE00000009CDS6876846068768778-
GWHAAZE00000009CDS6876724068767410-
GWHAAZE00000009CDS6876637868766639-
GWHAAZE00000009CDS6876583668765916-
GWHAAZE00000009CDS6876555368765673-
GWHAAZE00000009CDS6876426268764410-
GWHAAZE00000009CDS6876211168762205-
GWHAAZE00000009CDS6876093768761052-
GWHAAZE00000009CDS6876069468760846-
GWHAAZE00000009CDS6876004568760178-
GWHAAZE00000009CDS6875964568759776-
GWHAAZE00000009CDS6875924068759374-
GWHAAZE00000009CDS6875834568758482-
Transcript Sequence

Network for GWHGAAZE031997

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.22Aminotran_34345431.40E-08
PF00202.22Aminotran_36198031.90E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19562BIO3-BIO1 Metabolic pathways map01100
Biotin metabolismmap00780

Gene Ontology

GO term OntologyName
GO:0009102biological_processbiotin biosynthetic process
GO:0000287molecular_functionmagnesium ion binding
GO:0004141molecular_functiondethiobiotin synthase activity
GO:0005524molecular_functionATP binding
GO:0003824molecular_functioncatalytic activity
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.003
SRR3591706second leaf10.761
SRR3591707mature leaf4.008
SRR3591708Shoot apex18.599
SRR3591709Stem7.925
SRR3591710White floral bud7.235
SRR3591711White flower9.069
SRR3591712Green floral bud9.161
SRR3591713Yellow flower6.686
SRP173429 SRR8316895Juvenile bud stage 6.194
SRR8316896Juvenile bud stage 9.181
SRR8316897Juvenile bud stage 5.597
SRR8316894Third green stage 4.057
SRR8316900Third green stage 9.816
SRR8316901Third green stage 7.933
SRR8316898Complete white stage 1.523
SRR8316899Complete white stage 6.258
SRR8316903Complete white stage 3.271
SRR8316902Silver flowering stage1.419
SRR8316904Silver flowering stage2.470
SRR8316905Silver flowering stage1.254
SRR8316906Gold flowering stage 4.562
SRR8316907Gold flowering stage 5.698
SRR8316908Gold flowering stage 5.100
SRP132670SRR6706286Control7.793
SRR6706287Light intensity 50%9.446
SRR6706288Light intensity 20%9.615
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.932
CNS0095593Slightly white alabastrum(diploid) 26.760
CNS0095594Slightly white alabastrum(diploid) 35.723
CNS0095595Whole white alabastrum(diploid) 24.727
CNS0095596Whole white alabastrum(diploid) 33.167
CNS0095597Whole white alabastrum(diploid) 43.278
CNS0095598Silvery flower (diploied) 15.682
CNS0095599Silvery flower (diploied) 24.385
CNS0095600Silvery flower (diploied) 34.097
CNS0095601Golden flower (diploid) 13.495
CNS0095602Golden flower (diploid) 23.562
CNS0095603Golden flower (diploid) 33.240
CNS0095604Slightly white alabastrum(tetraploid) 16.253
CNS0095605Slightly white alabastrum(tetraploid) 25.504
CNS0095606Slightly white alabastrum(tetraploid) 312.096
CNS0095607Whole white alabastrum(tetraploid) 14.972
CNS0095608Whole white alabastrum(tetraploid) 22.697
CNS0095609Whole white alabastrum(tetraploid) 38.068
CNS0095610Silvery flower (tetraploid) 15.500
CNS0095611Silvery flower (tetraploid) 24.372
CNS0095612Silvery flower (tetraploid) 37.518
CNS0095613Golden flower (tetraploid) 12.224
CNS0095614Golden flower (tetraploid) 23.760
CNS0095615Golden flower (tetraploid) 31.204
CRA001975CRR073297Stem 110.223
CRR073298Stem 29.157
CRR073299Stem 34.359
CRR073300Leaf 18.687
CRR073301Leaf 28.989
CRR073302Leaf 35.920
CRR073303Juvenile bud 14.514
CRR073304Juvenile bud 23.271
CRR073305Juvenile bud 33.349
CRR073306Third green 11.802
CRR073307Third green 21.284
CRR073308Third green 31.111
CRR073309Second white 11.557
CRR073310Second white 21.913
CRR073311Second white 32.730
CRR073312Silver flowering 11.700
CRR073313Silver flowering 22.435
CRR073314Silver flowering 31.961
CRR073315Gold flowering 11.410
CRR073316Gold flowering 22.582
CRR073317Gold flowering 31.147
CRR073318Tawny withering 13.597
CRR073319Tawny withering 23.397
CRR073320Tawny withering 33.846