Gene detail

Detail information of GWHGAAZE031993

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN22712.1	1.4747E-149	Putative xyloglucan endotransglucosylase/hydrolase protein 23 [Glycine soja]
COG	YP_004642276.1	4E-15	protein GluB
Swissprot	tr\|Q38857\|XTH22_ARATH	2E-138	Xyloglucan endotransglucosylase/hydrolase protein 22 (Precursor)
trEMBL	tr\|A0A068U3Q5\|A0A068U3Q5_COFCA	1E-149	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT5G57560.1	1E-106	Xyloglucan endotransglucosylase/hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68695541	68697539	-
GWHAAZE00000009	mRNA	68695541	68697539	-
GWHAAZE00000009	exon	68695541	68695940	-
GWHAAZE00000009	exon	68696572	68696765	-
GWHAAZE00000009	exon	68697249	68697539	-
GWHAAZE00000009	CDS	68697249	68697539	-
GWHAAZE00000009	CDS	68696572	68696765	-
GWHAAZE00000009	CDS	68695541	68695940	-

Transcript Sequence
>GWHTAAZE032031 ATGCATTCTTCTTCTTCCTCCTTTTCTAATGTAATAGTAGACATGCTACTTTTAATGTCTCTCATAGGCATCTTTAAACCTGGATTTGGAGGTAATTTTTATCAAGATTTTGACATCATTTGGGGCGATGACCATGCTAAGATCCTCAATAACGCCGAGCTTCTTACGCTTTCTCTCGACAAAGCTTCTGGATCTGGTATCCAGTCGAAGAACGAATATCTATTTGGGAAAATTGATATGCAGCTCAAGCTTGTACCTGGAAACTCTGCTGGTACTGTTACTACTTACTATTTAACTTCCGAAGGGACAGATCATGATGAGATAGACCTCGAATTCTTGGGAAATCTAAGTGGAGATCCTTACATTCTTCATACTAATGTTTACACTCAAGGCAAAGGAGAGAAAGAACAACAATTCTACCTTTGGTTTGACCCCACTGCTGATTTTCACACCTATACTATCATTTGGAATCCTCATACCATCATCTTCTATGTTGATGGTACACCAATTCGCGTATTCAATAACTTGCAGTCGTACAACGTTCCGTATCCAAAAGATAGGCCGATGAGGGTGCGTGCTAGTTTGTGGGATGCAGATGATTGGGCAACAAGAGGCGGTCGTGTCAAGACAGACTGGACTAAAGCTCCTTTTGTTGCCTCCTTCTGTAACTACAATGCCGATGCTTGTATTTGGTTATCGGGAAAATCTTCTTGCTCTTCAAACTCGAACTCCTCGAATTCATGGTTTTCACAAGATTTGGACTCGACAGGACGGGAGAGGTTGAAATGGGTACAAAAGAAGTACATGATTTACAATTATTGCACAGATGTAAAGCGTTACCCACAAGGCCTTCCTCCCGAATGTGTTGCTAGTAAAAAAACATAG

Network for GWHGAAZE031993

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	34	214	3.30E-61
PF06955.13	XET_C	244	288	2.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14504	TCH4	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.152
	SRR3591706	second leaf	0.230
	SRR3591707	mature leaf	0.767
	SRR3591708	Shoot apex	2.709
	SRR3591709	Stem	1.128
	SRR3591710	White floral bud	2.853
	SRR3591711	White flower	5.626
	SRR3591712	Green floral bud	1.215
	SRR3591713	Yellow flower	8.434
SRP173429	SRR8316895	Juvenile bud stage	2.639
	SRR8316896	Juvenile bud stage	1.858
	SRR8316897	Juvenile bud stage	2.128
	SRR8316894	Third green stage	0.248
	SRR8316900	Third green stage	1.604
	SRR8316901	Third green stage	2.227
	SRR8316898	Complete white stage	1.553
	SRR8316899	Complete white stage	1.903
	SRR8316903	Complete white stage	1.062
	SRR8316902	Silver flowering stage	1.157
	SRR8316904	Silver flowering stage	0.892
	SRR8316905	Silver flowering stage	0.480
	SRR8316906	Gold flowering stage	1.875
	SRR8316907	Gold flowering stage	2.652
	SRR8316908	Gold flowering stage	3.661
SRP132670	SRR6706286	Control	0.303
	SRR6706287	Light intensity 50%	0.200
	SRR6706288	Light intensity 20%	0.271
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.430
	CNS0095593	Slightly white alabastrum(diploid) 2	6.752
	CNS0095594	Slightly white alabastrum(diploid) 3	5.367
	CNS0095595	Whole white alabastrum(diploid) 2	1.686
	CNS0095596	Whole white alabastrum(diploid) 3	2.468
	CNS0095597	Whole white alabastrum(diploid) 4	1.970
	CNS0095598	Silvery flower (diploied) 1	5.819
	CNS0095599	Silvery flower (diploied) 2	6.273
	CNS0095600	Silvery flower (diploied) 3	2.423
	CNS0095601	Golden flower (diploid) 1	5.366
	CNS0095602	Golden flower (diploid) 2	8.967
	CNS0095603	Golden flower (diploid) 3	8.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.370
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.916
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.345
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.674
	CNS0095610	Silvery flower (tetraploid) 1	6.483
	CNS0095611	Silvery flower (tetraploid) 2	5.910
	CNS0095612	Silvery flower (tetraploid) 3	4.399
	CNS0095613	Golden flower (tetraploid) 1	8.670
	CNS0095614	Golden flower (tetraploid) 2	10.725
	CNS0095615	Golden flower (tetraploid) 3	3.899
CRA001975	CRR073297	Stem 1	3.289
	CRR073298	Stem 2	2.169
	CRR073299	Stem 3	0.341
	CRR073300	Leaf 1	1.290
	CRR073301	Leaf 2	1.978
	CRR073302	Leaf 3	1.183
	CRR073303	Juvenile bud 1	0.279
	CRR073304	Juvenile bud 2	0.067
	CRR073305	Juvenile bud 3	0.219
	CRR073306	Third green 1	1.613
	CRR073307	Third green 2	1.497
	CRR073308	Third green 3	2.344
	CRR073309	Second white 1	1.921
	CRR073310	Second white 2	1.564
	CRR073311	Second white 3	2.282
	CRR073312	Silver flowering 1	1.913
	CRR073313	Silver flowering 2	3.332
	CRR073314	Silver flowering 3	2.499
	CRR073315	Gold flowering 1	0.907
	CRR073316	Gold flowering 2	0.746
	CRR073317	Gold flowering 3	0.095
	CRR073318	Tawny withering 1	1.099
	CRR073319	Tawny withering 2	3.069
	CRR073320	Tawny withering 3	0.211