Detail information of GWHGAAZE031991


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02971.17.6449E-138unnamed protein product [Coffea canephora]
Swissprottr|Q9FKM2|VDAC4_ARATH1E-108Mitochondrial outer membrane protein porin 4
trEMBLtr|A0A068U385|A0A068U385_COFCA3E-138Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP02971.1}
TAIR10AT5G57490.12E-87voltage dependent anion channel 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6861639468621057-
GWHAAZE00000009mRNA6861639468621057-
GWHAAZE00000009exon6861639468616700-
GWHAAZE00000009exon6861932268619530-
GWHAAZE00000009exon6862058868620674-
GWHAAZE00000009exon6862084168620951-
GWHAAZE00000009exon6862105568621057-
GWHAAZE00000009CDS6862105568621057-
GWHAAZE00000009CDS6862084168620951-
GWHAAZE00000009CDS6862058868620674-
GWHAAZE00000009CDS6861932268619530-
GWHAAZE00000009CDS6861639468616700-
Transcript Sequence

Network for GWHGAAZE031991

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01459.23Porin_362315.80E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15040VDAC2 Calcium signaling pathway map04020
cGMP-PKG signaling pathwaymap04022
Ferroptosismap04216
Necroptosismap04217
Cellular senescencemap04218
NOD-like receptor signaling pathwaymap04621
Cholesterol metabolismmap04979

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0005741cellular_componentmitochondrial outer membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf79.060
SRR3591706second leaf47.020
SRR3591707mature leaf39.720
SRR3591708Shoot apex82.814
SRR3591709Stem59.102
SRR3591710White floral bud96.705
SRR3591711White flower96.907
SRR3591712Green floral bud108.777
SRR3591713Yellow flower111.300
SRP173429 SRR8316895Juvenile bud stage 51.102
SRR8316896Juvenile bud stage 78.172
SRR8316897Juvenile bud stage 39.877
SRR8316894Third green stage 26.364
SRR8316900Third green stage 88.776
SRR8316901Third green stage 98.114
SRR8316898Complete white stage 44.722
SRR8316899Complete white stage 117.418
SRR8316903Complete white stage 50.200
SRR8316902Silver flowering stage40.839
SRR8316904Silver flowering stage44.424
SRR8316905Silver flowering stage22.479
SRR8316906Gold flowering stage 77.983
SRR8316907Gold flowering stage 79.817
SRR8316908Gold flowering stage 85.293
SRP132670SRR6706286Control101.951
SRR6706287Light intensity 50%95.365
SRR6706288Light intensity 20%105.195
CNP0000432CNS0095592Slightly white alabastrum(diploid) 185.725
CNS0095593Slightly white alabastrum(diploid) 2100.548
CNS0095594Slightly white alabastrum(diploid) 381.340
CNS0095595Whole white alabastrum(diploid) 287.304
CNS0095596Whole white alabastrum(diploid) 3107.023
CNS0095597Whole white alabastrum(diploid) 488.403
CNS0095598Silvery flower (diploied) 143.035
CNS0095599Silvery flower (diploied) 245.887
CNS0095600Silvery flower (diploied) 355.461
CNS0095601Golden flower (diploid) 132.015
CNS0095602Golden flower (diploid) 247.733
CNS0095603Golden flower (diploid) 345.126
CNS0095604Slightly white alabastrum(tetraploid) 1102.678
CNS0095605Slightly white alabastrum(tetraploid) 293.790
CNS0095606Slightly white alabastrum(tetraploid) 399.281
CNS0095607Whole white alabastrum(tetraploid) 188.906
CNS0095608Whole white alabastrum(tetraploid) 292.740
CNS0095609Whole white alabastrum(tetraploid) 392.123
CNS0095610Silvery flower (tetraploid) 158.282
CNS0095611Silvery flower (tetraploid) 255.955
CNS0095612Silvery flower (tetraploid) 383.859
CNS0095613Golden flower (tetraploid) 157.061
CNS0095614Golden flower (tetraploid) 253.338
CNS0095615Golden flower (tetraploid) 373.752
CRA001975CRR073297Stem 194.863
CRR073298Stem 280.290
CRR073299Stem 388.283
CRR073300Leaf 195.469
CRR073301Leaf 292.493
CRR073302Leaf 3115.454
CRR073303Juvenile bud 1110.594
CRR073304Juvenile bud 292.729
CRR073305Juvenile bud 383.085
CRR073306Third green 197.183
CRR073307Third green 2109.165
CRR073308Third green 392.444
CRR073309Second white 167.942
CRR073310Second white 264.750
CRR073311Second white 345.292
CRR073312Silver flowering 159.429
CRR073313Silver flowering 261.310
CRR073314Silver flowering 358.103
CRR073315Gold flowering 166.283
CRR073316Gold flowering 277.163
CRR073317Gold flowering 361.449
CRR073318Tawny withering 186.853
CRR073319Tawny withering 280.570
CRR073320Tawny withering 391.384