Gene detail

Detail information of GWHGAAZE031986

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268968.1	5.8373E-152	PREDICTED: DNA repair protein XRCC3 homolog [Vitis vinifera]
COG	YP_003815908.1	2E-25	DNA repair and recombination protein radA
Swissprot	tr\|Q9FKM5\|XRCC3_ARATH	9E-121	DNA repair protein XRCC3 homolog
trEMBL	tr\|F6GXG5\|F6GXG5_VITVI	2E-152	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44651.1}
TAIR10	AT5G57450.2	2E-85	homolog of X-ray repair cross complementing 3 (XRCC3)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68525295	68526167	+
GWHAAZE00000009	mRNA	68525295	68526167	+
GWHAAZE00000009	exon	68525295	68526167	+
GWHAAZE00000009	CDS	68525295	68526167	+

Transcript Sequence
>GWHTAAZE032024 ATGACGCCGGAAAATCTCCTTCAACTCCCACTCCCCACCCAGAAATGCACCATTGGCTGTCCGGTAATCGACCGATTACTCGCCGGAGGAATCCCCTGCAACTCAATAACCGAACTAGTCTCCGAGAGCGGGTGTGGAAAGACCCAAATCTGCCTCCAAATCCTCCTCTCTTCCCAGCTCCCCGCCGCTGCCGGCGGCCTAGCCGGCGCCTCCCTCTACCTCCACTCCGAGTTTCCATTCCCCCTCCGCCGCCTCCACCAACTTTCCCACTCATTCACCTCCTCAAAAAATCCGTTGGATAACATTTTAGTCCACCCATTGCATTCTGCAGACCAACTGTTCGACGTATTGTCCAAGGCAGATTTGGTTTTAGAAAACCCACCTACCCAATTACCCATTAGGCTTATTGTGATCGATTCGATCGCGGCTTTGTTTCGCTCTGAATTTGAGAACACCCCGTGTGATCTTAAGCGGAGGGCGGGACTGTTTTTCAAGATTTCGGGCAAGTTAAAGGCGTTGGCAAAAAGATTTGGGCTTGCCATTGTGATTACTAATCAAGTGGTTGATTTGGTGGGGTCGAGTGAGGGGATTAATGGGATGAGGATTGGGAATTTGAGTGCGTTGTATTCGTCTGGGAGACGGGTTTGTCCCGCACTTGGGCTATCATGGGCAAATTGTGTGAATTCAAGGCTGTTCTTGTCTCGAAATGAGGTGATAATAGGGGAAGATAATGGTTTGGGTGATGTGGGTACTGGTGATTTTGTTAGTAGACAAACAAAGAGGGAGCTTCATGTTGTTTTTTCTCCTCATTTGCCTTATTCGTCTTGCGAATTTGTGATAGCAAGAGAATGTGTTTTTGGGGTTGATAGATAA

Network for GWHGAAZE031986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08423.12	Rad51	16	285	2.90E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10880	XRCC3	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0008094	molecular_function	DNA-dependent ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.726
	SRR3591706	second leaf	2.726
	SRR3591707	mature leaf	2.378
	SRR3591708	Shoot apex	4.699
	SRR3591709	Stem	2.096
	SRR3591710	White floral bud	3.458
	SRR3591711	White flower	3.870
	SRR3591712	Green floral bud	4.690
	SRR3591713	Yellow flower	3.422
SRP173429	SRR8316895	Juvenile bud stage	2.176
	SRR8316896	Juvenile bud stage	2.604
	SRR8316897	Juvenile bud stage	1.115
	SRR8316894	Third green stage	0.789
	SRR8316900	Third green stage	4.021
	SRR8316901	Third green stage	2.867
	SRR8316898	Complete white stage	0.746
	SRR8316899	Complete white stage	3.238
	SRR8316903	Complete white stage	1.177
	SRR8316902	Silver flowering stage	0.473
	SRR8316904	Silver flowering stage	0.638
	SRR8316905	Silver flowering stage	0.346
	SRR8316906	Gold flowering stage	1.600
	SRR8316907	Gold flowering stage	1.468
	SRR8316908	Gold flowering stage	2.058
SRP132670	SRR6706286	Control	4.348
	SRR6706287	Light intensity 50%	4.118
	SRR6706288	Light intensity 20%	4.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.908
	CNS0095593	Slightly white alabastrum(diploid) 2	3.481
	CNS0095594	Slightly white alabastrum(diploid) 3	1.822
	CNS0095595	Whole white alabastrum(diploid) 2	1.496
	CNS0095596	Whole white alabastrum(diploid) 3	1.231
	CNS0095597	Whole white alabastrum(diploid) 4	0.931
	CNS0095598	Silvery flower (diploied) 1	1.539
	CNS0095599	Silvery flower (diploied) 2	0.962
	CNS0095600	Silvery flower (diploied) 3	2.289
	CNS0095601	Golden flower (diploid) 1	0.211
	CNS0095602	Golden flower (diploid) 2	2.499
	CNS0095603	Golden flower (diploid) 3	2.190
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.360
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.456
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.726
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.592
	CNS0095610	Silvery flower (tetraploid) 1	2.920
	CNS0095611	Silvery flower (tetraploid) 2	2.815
	CNS0095612	Silvery flower (tetraploid) 3	2.342
	CNS0095613	Golden flower (tetraploid) 1	1.125
	CNS0095614	Golden flower (tetraploid) 2	1.985
	CNS0095615	Golden flower (tetraploid) 3	1.200
CRA001975	CRR073297	Stem 1	1.615
	CRR073298	Stem 2	2.510
	CRR073299	Stem 3	2.503
	CRR073300	Leaf 1	1.602
	CRR073301	Leaf 2	1.759
	CRR073302	Leaf 3	1.512
	CRR073303	Juvenile bud 1	1.367
	CRR073304	Juvenile bud 2	1.318
	CRR073305	Juvenile bud 3	1.598
	CRR073306	Third green 1	0.639
	CRR073307	Third green 2	0.768
	CRR073308	Third green 3	0.419
	CRR073309	Second white 1	0.302
	CRR073310	Second white 2	0.592
	CRR073311	Second white 3	0.551
	CRR073312	Silver flowering 1	0.165
	CRR073313	Silver flowering 2	0.099
	CRR073314	Silver flowering 3	0.115
	CRR073315	Gold flowering 1	1.527
	CRR073316	Gold flowering 2	1.426
	CRR073317	Gold flowering 3	1.528
	CRR073318	Tawny withering 1	2.973
	CRR073319	Tawny withering 2	2.877
	CRR073320	Tawny withering 3	3.016