Gene detail

Detail information of GWHGAAZE031971

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281083.2	5.57571E-97	PREDICTED: transcription factor bHLH94 [Vitis vinifera]
Swissprot	tr\|Q9SK91\|BH094_ARATH	4E-64	Transcription factor bHLH94
trEMBL	tr\|D7U1X5\|D7U1X5_VITVI	2E-97	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36741.3}
TAIR10	AT1G72210.1	3E-44	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68271986	68274857	-
GWHAAZE00000009	mRNA	68271986	68274857	-
GWHAAZE00000009	exon	68271986	68272078	-
GWHAAZE00000009	exon	68273161	68273565	-
GWHAAZE00000009	exon	68274264	68274857	-
GWHAAZE00000009	CDS	68274264	68274857	-
GWHAAZE00000009	CDS	68273161	68273565	-
GWHAAZE00000009	CDS	68271986	68272078	-

Transcript Sequence
>GWHTAAZE032009 ATGGCTCTACAAACTCTGTTATTTCCACAAGATCCCTTTACTTATAATCCCAATGATCTCTACAACTTTTTTGGAGGAAATTTTCCCTCAGATTTGGGTCAATTCGAAAATGAAGAGGAAAAAAGTTCCTTCCACTTTCTTGAGAATCAAACAGAAATTCTTCACCAGGAAAACTGCAATCCTCCTCCAATTCCTTCATTGCTCCCGAACTTGGATAAATGGGTTCCTAATTCAGCCTTAGATTCGAACCCGAAAAATGTTACCGGTACTGAAGTGGAAAAAAGCTTTGTTCACTTTCTCGAGAACCAAACAGAACATTTTCACCAAGAAAATTGCAATTCTGCAATTCCTCCATTGGTTCCGAATTTGGAAGAATGGGTTCCTAATGCAGCCATTGGTTCCGAAGAATTCCCAGAATTTGATTCATGGAGAACAGAGCCGGGTAAGCCAAAGAGACGACGTCGTTTAAGGAGCAAGAAGAAGATGGAAGACATTGAGAAGCAGAGGATGACTCACATTGCCGTTGAGCGTAATCGCCGAAAGCAAATGAACGACTACTTATCCGCGCTCCGGCAACTCATGCCGGAATCATATGTTGATCAAGCATCAATAGTAAGTGGTGCCATTAATTATGTAAAAGACCTTGAGCAACAGCTTCAATTCCTCGGTGGCCAAAAACACTTGAAGAACCAACAAAAAAAGGAGAAAATTAGTACTTCAAATTGGCCTTTTAATGAATTCTTCACATTCCCACAATACTACTACTCATCAAATTCAAATCAATCTGACAATCCAACGGCCAATAACTCATCAGCCACAAATGTAGGTGACATAGAAGTCAGCCTGGTGGAGAGCCATGCAAGCATTAAAATAAGGTCAAAAAGAAGACCCAAACAGCTCCTTAGATTATTGTCTGGTTTGCAAAGACTCTGCCTCACTCTCCTTCATCTTAATGTTACCACTTCAGATCAAGTTGTTCTCTATTCTCTCTGCCTCAAGGTAGAAGATGAGTGTAGGTTGACTTCAATGGATGAAATTGCTACTGCTATTCATCAGATACTAAGTAGAATTCAAGAAGAGAGTCTGCCTTGA

Network for GWHGAAZE031971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	168	216	1.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.021
	SRR3591706	second leaf	0.813
	SRR3591707	mature leaf	0.145
	SRR3591708	Shoot apex	3.118
	SRR3591709	Stem	11.573
	SRR3591710	White floral bud	0.793
	SRR3591711	White flower	0.456
	SRR3591712	Green floral bud	0.214
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.102
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.125
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.537
	SRR8316903	Complete white stage	0.153
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.044
	SRR6706287	Light intensity 50%	0.083
	SRR6706288	Light intensity 20%	0.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.408
	CNS0095593	Slightly white alabastrum(diploid) 2	0.293
	CNS0095594	Slightly white alabastrum(diploid) 3	0.448
	CNS0095595	Whole white alabastrum(diploid) 2	0.081
	CNS0095596	Whole white alabastrum(diploid) 3	0.050
	CNS0095597	Whole white alabastrum(diploid) 4	0.344
	CNS0095598	Silvery flower (diploied) 1	1.260
	CNS0095599	Silvery flower (diploied) 2	0.849
	CNS0095600	Silvery flower (diploied) 3	0.813
	CNS0095601	Golden flower (diploid) 1	0.672
	CNS0095602	Golden flower (diploid) 2	0.792
	CNS0095603	Golden flower (diploid) 3	0.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.474
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.131
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.189
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.352
	CNS0095612	Silvery flower (tetraploid) 3	0.030
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.219
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.007
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.562
	CRR073319	Tawny withering 2	1.559
	CRR073320	Tawny withering 3	4.741