Gene detail

Detail information of GWHGAAZE031970

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN75517.1	4.3867E-169	hypothetical protein VITISV_033021 [Vitis vinifera]
Swissprot	tr\|Q9FPS4\|UBP23_ARATH	2E-83	Ubiquitin carboxyl-terminal hydrolase 23
trEMBL	tr\|A5CBT2\|A5CBT2_VITVI	2E-169	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G57990.1	9E-77	ubiquitin-specific protease 23

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68262194	68267580	+
GWHAAZE00000009	mRNA	68262194	68267580	+
GWHAAZE00000009	exon	68262194	68262520	+
GWHAAZE00000009	exon	68263083	68263208	+
GWHAAZE00000009	exon	68263792	68264502	+
GWHAAZE00000009	exon	68264625	68264693	+
GWHAAZE00000009	exon	68265508	68266213	+
GWHAAZE00000009	exon	68266797	68266890	+
GWHAAZE00000009	exon	68267481	68267580	+
GWHAAZE00000009	CDS	68262194	68262520	+
GWHAAZE00000009	CDS	68263083	68263208	+
GWHAAZE00000009	CDS	68263792	68264502	+
GWHAAZE00000009	CDS	68264625	68264693	+
GWHAAZE00000009	CDS	68265508	68266213	+
GWHAAZE00000009	CDS	68266797	68266890	+
GWHAAZE00000009	CDS	68267481	68267580	+

Transcript Sequence
>GWHTAAZE032008 GTGAAATGTATGCAGTGTAACTATTGTTCCGACAAGTTTGATCCATTTTTAGATTTAAGTCTTGAAATTGTAAAGGCAGATTCTTTGTACAAGGCACTTGCCCATTTCACTGCCAAAGAGCAGTTAGATGGAGGGGAGAGGCATTACCAGTGCCAGCAGTGCAAACAGAAAGTTAAGGCTCTCAAACAGCTCACAATTCACAAGGCGCCCGATGTGCTTACCATTCACCTAAAGCGGTTCGGTTCACATGTACAAGGACAAAAGATTGACAAGAAAATCTTGTTCGGTCCTACCTTGGACTTAAAACCTTTTGCCACTGGTCCATATGATGGAGATTTGAAATACAATCTTTATGGTGTGTTGGTTCATGCTGGTTGGAGCACCCATTCTGGCCACTATTTCTCATTTGTTCGCACATCAAGCGGCATGTGGTACAATCTTGATGACAATCGGGTTGTACAAGTTAGTGAGAGAAAGGTTTTGGAGCAGAAGGCATACATGTTGTTCTATTCTAGAGACAGAAGAAATTTTGCTCCAAAGAAGCCTGTTCACATTGTTCAGAAAGAAAACATGGCCATAAACGCAATTGGAAGAAATAACCCATTTTCTAATTTCAGCCAAGGATTAAACAAAGGTTCCCTTCATAATGGTCCAATCAATATTCGATTAAATACTGCAAATTCGTCTGCTGCTGTTGCTCAACGTGATGCATTAAACGCTTGTTCATTGAATGAGACAATTATGAAAGAAGCTTCTATTAAAAAAACTAATGGGTCAGTTATAGCAGAAGGCTCATCAGATAAGGATCAAGCTGTTTCATTAGATGAGGCTGCTAATGGCTCTCTTAAGCTTGATAATGTTACTAACACGAAGACCGAGGCTTCAGCTAACATGAAGACCATGGCTGAAACTGTCAGTTCCTGTTCAAACAGAATTACCAAGAAAGATCTGAGCAATTCCATTGTGATACTACCCAATGGCAATGGCTCCGAAAACCCAGTTACGAAGAAAGATTTGAGTGACACAGCTGCCAAATCAGTAAACTGCAATGAGAACACGAGCACCAAGGAAGATCTTAGTGAGTCGAGCCTTCTACCATCGAACTGCAACATCCTCAATAAATCTGCTGCAGATACATTCGTGGCTGAGATGAACTCTGTCGAGGATCTTCATAAAGGTTTATCACTTGATGTTGGTGGAAGAACATTGGAGAAAATTGAGCCTAGTAGTCGGACTGGAGATCTCACCCAGAATAGTTCAGGTGGTGATTTAATCAGTCAAAAGGCTGATACTAATGGGCAAAGATTGGTAAATTCTGCACCAGCAGAATTATCAAGCGCACTGATCCCAACACAGACCCCATTAAACAAGAAAGCTCTTGATCAGAGGCCCTACAAAAAGCGTAAAAAGAAGCATCTTGTACATCAGGGTACAAGTATGCATCTTAGCTCAAAAATTCTTTTTGGTGCATCTGTAAAACTCCAAAAGAAGAAGAAACACAAACGGACCAAGCCATGCAAATCTGGGATCAAGAATCTCAGTCAAGAAGACTTTTTAAATGGAGATTGTATCCAAACGGATCTCGGGCCATCTACGTCTGAGAAACCTAGGGCAATAATTCCCCATGATGGGTGCGCTCACTCTCGAAGAAAGGGTGTGTCTGGTACAAAGAGTTCAAAGAAGAAAGAGGATAAAGTGGGGAAGAATGCTGAGACAAACTCTAATGGAGATGTCTTGATGGTTGATAAAGATTTTAGAGAGAGAAATGGTCAGAATGGTGCAGTGCTTGCCGCCGTGGTACATCAAAAGATTACTAGTACCGTTTCAGCAGGAAATCAGGTGGATGGTAGAGAAGTCAACAGTACAAATGATGGAGGAAATGATTCAACGCAGAATGGTTTGATGAGTATGCTTACAAGAGGTTTAGAGGAGACAATTGTGAAACGGTGGGATGGGATGGAATCGTGTCCATCTGCAATGGCAGAATCAAATGGTGCGAGGAGTGTCAAAATTGGGTACATTGGGGATGATTGCCTTACTCAAGTGAAAGAGGGCAAGGGGATGGAACCGGCAAAAACCTTTGAAGTAAGGGATTTGAGACCTAGTACCATTGAGATATACAACTCTTCGTAG

Network for GWHGAAZE031970

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	27	170	9.00E-27

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.835
	SRR3591706	second leaf	21.057
	SRR3591707	mature leaf	15.044
	SRR3591708	Shoot apex	24.759
	SRR3591709	Stem	21.440
	SRR3591710	White floral bud	21.817
	SRR3591711	White flower	33.434
	SRR3591712	Green floral bud	31.036
	SRR3591713	Yellow flower	19.826
SRP173429	SRR8316895	Juvenile bud stage	22.273
	SRR8316896	Juvenile bud stage	32.792
	SRR8316897	Juvenile bud stage	16.392
	SRR8316894	Third green stage	13.865
	SRR8316900	Third green stage	39.940
	SRR8316901	Third green stage	33.980
	SRR8316898	Complete white stage	7.341
	SRR8316899	Complete white stage	35.111
	SRR8316903	Complete white stage	18.949
	SRR8316902	Silver flowering stage	11.430
	SRR8316904	Silver flowering stage	17.500
	SRR8316905	Silver flowering stage	6.396
	SRR8316906	Gold flowering stage	22.577
	SRR8316907	Gold flowering stage	24.450
	SRR8316908	Gold flowering stage	26.010
SRP132670	SRR6706286	Control	27.580
	SRR6706287	Light intensity 50%	28.747
	SRR6706288	Light intensity 20%	29.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.433
	CNS0095593	Slightly white alabastrum(diploid) 2	19.223
	CNS0095594	Slightly white alabastrum(diploid) 3	19.752
	CNS0095595	Whole white alabastrum(diploid) 2	15.672
	CNS0095596	Whole white alabastrum(diploid) 3	14.968
	CNS0095597	Whole white alabastrum(diploid) 4	14.691
	CNS0095598	Silvery flower (diploied) 1	20.759
	CNS0095599	Silvery flower (diploied) 2	17.532
	CNS0095600	Silvery flower (diploied) 3	30.191
	CNS0095601	Golden flower (diploid) 1	17.417
	CNS0095602	Golden flower (diploid) 2	27.604
	CNS0095603	Golden flower (diploid) 3	26.915
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.585
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.923
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.954
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.004
	CNS0095610	Silvery flower (tetraploid) 1	31.642
	CNS0095611	Silvery flower (tetraploid) 2	28.520
	CNS0095612	Silvery flower (tetraploid) 3	24.757
	CNS0095613	Golden flower (tetraploid) 1	13.188
	CNS0095614	Golden flower (tetraploid) 2	26.003
	CNS0095615	Golden flower (tetraploid) 3	18.045
CRA001975	CRR073297	Stem 1	28.093
	CRR073298	Stem 2	24.744
	CRR073299	Stem 3	18.139
	CRR073300	Leaf 1	28.722
	CRR073301	Leaf 2	25.206
	CRR073302	Leaf 3	19.557
	CRR073303	Juvenile bud 1	26.244
	CRR073304	Juvenile bud 2	14.956
	CRR073305	Juvenile bud 3	30.994
	CRR073306	Third green 1	10.023
	CRR073307	Third green 2	8.464
	CRR073308	Third green 3	9.569
	CRR073309	Second white 1	11.215
	CRR073310	Second white 2	14.749
	CRR073311	Second white 3	17.544
	CRR073312	Silver flowering 1	13.501
	CRR073313	Silver flowering 2	14.913
	CRR073314	Silver flowering 3	11.653
	CRR073315	Gold flowering 1	8.550
	CRR073316	Gold flowering 2	16.348
	CRR073317	Gold flowering 3	7.850
	CRR073318	Tawny withering 1	21.198
	CRR073319	Tawny withering 2	20.241
	CRR073320	Tawny withering 3	20.916