Gene detail

Detail information of GWHGAAZE031969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI20097.3	4.43901E-77	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9FPS4\|UBP23_ARATH	4E-57	Ubiquitin carboxyl-terminal hydrolase 23
trEMBL	tr\|F6H2K2\|F6H2K2_VITVI	2E-77	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G57990.1	5E-50	ubiquitin-specific protease 23

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	68254684	68260358	+
GWHAAZE00000009	mRNA	68254684	68260358	+
GWHAAZE00000009	exon	68254684	68255117	+
GWHAAZE00000009	exon	68255973	68256330	+
GWHAAZE00000009	exon	68258568	68258682	+
GWHAAZE00000009	exon	68260165	68260358	+
GWHAAZE00000009	five_prime_UTR	68254684	68255117	+
GWHAAZE00000009	five_prime_UTR	68255973	68256018	+
GWHAAZE00000009	CDS	68256019	68256330	+
GWHAAZE00000009	CDS	68258568	68258682	+
GWHAAZE00000009	CDS	68260165	68260301	+
GWHAAZE00000009	three_prime_UTR	68260302	68260358	+

Transcript Sequence
>GWHTAAZE032007 CTAGTATGTTGCTCCCTCTCCCTCTATCTCTACACCATTAGCCGAAATGCTGAGTCGGTGAAACAAACCCCCAATCCTCTTTACGCGGGATTTAGAGAGAGAAACACTCCTACCAAGCTCAAATCCCTTTGATTCATAACCCCAGCCTTCACCGATTTCTTAAAATCCCCTCTGTATTTTTCATCGCCGGCTGTTTTCTTCACCGCCGCCGGTCTGTCGGACTGAATCACACATCTCGTCGATCGGCCTCTCCCTCTCTTTCGATCCGCCGCCGATTACAAACCTACACTCGCCGTCGCCCTTCGCCCTTCGCCTAGTTGATCCCTTCATCTGTGCTACAGCTGCCTGAATTCGCACTCTCAGTCGCCAGTCGCCTCTGCTGCTCACCGGAGTGGCGCTAGTGGTCATTGGAGTTATTTAAGGAACTAACGGAGGATTGCAACCAAGAGGGGGATTGTATTCAAGATTTGAAGACCCTTTATGGAGTCTCTCATGAATACAACAGAAACCAATACTCAAATAGATGGGTTATCAGACCCACCGACTACGTCCATGGACGGTTCTCTCTTTTGTAGGAGAATTGAGTTCCATCTTGCTAGGAAGCCATTCACTGGGTTCACTAATGGGGGTGTTGGCTTTCGGCTAGAGACTCTAAACCCAAGCTCAAGGACCCAAAAACCAGGATCGAACCAGGTGAATGGTCCATTGCCTTTGGTTGGGAAGAAGCCAGAGGAAAATGGGTTGGATCCTGAGCTAAGTTTTGGAATTGCTTTCAGGAGAATTGTTAGAATTGGTGCTGGTTTGGAAAATCTTGGTAATACTTGTTTTCTCAATTCGGTACTACAATGCCTGACCTACACAGAGCCTTTAGCAGCATATATACAAAGTGGAAAGCATCATGTTTCTTGTCGTACTGCTGGATTTTGTGCTTTATGTGCCATTCAGAAACATGTTAGCCGTGCTCTACAATCAACAGGGAGAATATTAGCACCTAAGGAGCTCGTTTCAAACCTGCGATGTATCCTATTAATGTTATATTCTTGATTATATGCTTGAATTTCTGCCAAAGATACAATATTTATCGTGCCTTTGAAGGTCAAC

Network for GWHGAAZE031969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	107	144	6.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.785
	SRR3591706	second leaf	13.793
	SRR3591707	mature leaf	10.717
	SRR3591708	Shoot apex	14.584
	SRR3591709	Stem	14.391
	SRR3591710	White floral bud	13.164
	SRR3591711	White flower	20.197
	SRR3591712	Green floral bud	18.445
	SRR3591713	Yellow flower	14.066
SRP173429	SRR8316895	Juvenile bud stage	12.681
	SRR8316896	Juvenile bud stage	15.150
	SRR8316897	Juvenile bud stage	8.160
	SRR8316894	Third green stage	8.796
	SRR8316900	Third green stage	22.767
	SRR8316901	Third green stage	21.840
	SRR8316898	Complete white stage	4.430
	SRR8316899	Complete white stage	20.326
	SRR8316903	Complete white stage	12.424
	SRR8316902	Silver flowering stage	7.577
	SRR8316904	Silver flowering stage	11.860
	SRR8316905	Silver flowering stage	5.414
	SRR8316906	Gold flowering stage	15.512
	SRR8316907	Gold flowering stage	13.629
	SRR8316908	Gold flowering stage	14.762
SRP132670	SRR6706286	Control	26.527
	SRR6706287	Light intensity 50%	26.373
	SRR6706288	Light intensity 20%	29.519
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.397
	CNS0095593	Slightly white alabastrum(diploid) 2	3.064
	CNS0095594	Slightly white alabastrum(diploid) 3	3.705
	CNS0095595	Whole white alabastrum(diploid) 2	5.585
	CNS0095596	Whole white alabastrum(diploid) 3	4.180
	CNS0095597	Whole white alabastrum(diploid) 4	4.880
	CNS0095598	Silvery flower (diploied) 1	13.385
	CNS0095599	Silvery flower (diploied) 2	8.663
	CNS0095600	Silvery flower (diploied) 3	25.787
	CNS0095601	Golden flower (diploid) 1	5.757
	CNS0095602	Golden flower (diploid) 2	21.212
	CNS0095603	Golden flower (diploid) 3	22.709
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.260
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.648
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.908
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.199
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.509
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.271
	CNS0095610	Silvery flower (tetraploid) 1	23.644
	CNS0095611	Silvery flower (tetraploid) 2	22.945
	CNS0095612	Silvery flower (tetraploid) 3	18.035
	CNS0095613	Golden flower (tetraploid) 1	4.051
	CNS0095614	Golden flower (tetraploid) 2	16.600
	CNS0095615	Golden flower (tetraploid) 3	15.698
CRA001975	CRR073297	Stem 1	17.854
	CRR073298	Stem 2	19.389
	CRR073299	Stem 3	16.663
	CRR073300	Leaf 1	19.086
	CRR073301	Leaf 2	15.841
	CRR073302	Leaf 3	15.409
	CRR073303	Juvenile bud 1	14.624
	CRR073304	Juvenile bud 2	12.159
	CRR073305	Juvenile bud 3	21.021
	CRR073306	Third green 1	8.971
	CRR073307	Third green 2	7.557
	CRR073308	Third green 3	8.283
	CRR073309	Second white 1	8.615
	CRR073310	Second white 2	10.466
	CRR073311	Second white 3	12.066
	CRR073312	Silver flowering 1	8.649
	CRR073313	Silver flowering 2	11.015
	CRR073314	Silver flowering 3	9.293
	CRR073315	Gold flowering 1	4.680
	CRR073316	Gold flowering 2	12.477
	CRR073317	Gold flowering 3	6.011
	CRR073318	Tawny withering 1	9.633
	CRR073319	Tawny withering 2	6.025
	CRR073320	Tawny withering 3	7.816