Gene detail

Detail information of GWHGAAZE031949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011023509.1	0	PREDICTED: gibberellin receptor GID1C [Populus euphratica]
COG	YP_004642863.1	4E-26	alpha/beta hydrolase
Swissprot	tr\|Q940G6\|GID1C_ARATH	0	Gibberellin receptor GID1C
trEMBL	tr\|B9I826\|B9I826_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE95499.1}
TAIR10	AT5G27320.1	2E-162	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67825630	67826625	+
GWHAAZE00000009	mRNA	67825630	67826625	+
GWHAAZE00000009	exon	67825630	67826625	+
GWHAAZE00000009	CDS	67825630	67826625	+

Transcript Sequence
>GWHTAAZE031987 ATGGTGGTCCCACTGAATACTTGGATCCTCATATCCAACTTCAAGCTGGCTTACAATCTTCTTCGCCGCCCTGATGGGACCTTCAATCGCCACTTGGCCGAGTTTCTTGACCGGAAAGTCCTTGCCAATGCAAATCCGGTTGATGGGGTTTTCTCCTTCGATGTCCTTATAGAACGACCAACCAATCTCCTTGGCCGAATCTACCGTCAGTCCGATCCCCAAGGAGCCCCACCGAGCTTTGCTGATCTCGAAAAACCTTTAACCGCCGATATTGTCCCTGTCATAATATTCTTCCATGGAGGAAGCTTTGCACATTCCTCTGCTAACAGTGCGATCTACGATACTCTCTGTCGCCGCCTAGTGGGCATTTGTAAGGCCGTTGTGGTATCTGTAAATTACCGTCGTGCCCCTGAAGACCCTTTCCCTTGTGCCTATGAAGATGGTTGGGCCGCCCTCAAGTGGGTCAGTTCAAGGACATGGCTTCAGAGCCAGAAGGATTCTAAAGTTCATATATACTTGGCTGGAGATAGTTCTGGGGGTAATATCGTACACAATGTTTCTTTAAGGGCAATCCCGTCAGGAATTGATATACTGGGCAACATACTACTCAACCCAATGTTTGGTGGGCAAGAAAGGACTGAATCAGAGACTCGTTTGGACGGGAAATATTTTGTCACTATCAGGGATAGGGATTGGTATTGGCGAGCTTTTCTACCCGAAGGGGAAGATAGGGACCATCCTGCGTGTAACCCGTTTGGCCCCAAGGGTATAAATCTTGAAGGGATTAAATTCCCTAAAAGTCTTGTTGTGGTGGCCGGTTTGGACCTTGTTCAAGATTGGCAATTGGCTTATGCTGAAGGGCTGAAAAAGGCTGGCCAAGAAGTGAAACTTCTATATTTGGAACAGGCGACAATCGGGTTCTACTTGTTGCCGAACAATGACCATTTCTATACCGTGATGGACGAGTTACGTAACTTTGTGGGTTCCAACTGTTAA

Network for GWHGAAZE031949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07859.14	Abhydrolase_3	95	308	1.70E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14493	GID1	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.361
	SRR3591706	second leaf	23.753
	SRR3591707	mature leaf	61.009
	SRR3591708	Shoot apex	26.458
	SRR3591709	Stem	91.026
	SRR3591710	White floral bud	32.168
	SRR3591711	White flower	103.686
	SRR3591712	Green floral bud	34.424
	SRR3591713	Yellow flower	65.935
SRP173429	SRR8316895	Juvenile bud stage	23.529
	SRR8316896	Juvenile bud stage	35.760
	SRR8316897	Juvenile bud stage	12.874
	SRR8316894	Third green stage	16.123
	SRR8316900	Third green stage	31.138
	SRR8316901	Third green stage	42.024
	SRR8316898	Complete white stage	16.254
	SRR8316899	Complete white stage	50.009
	SRR8316903	Complete white stage	33.498
	SRR8316902	Silver flowering stage	36.907
	SRR8316904	Silver flowering stage	60.199
	SRR8316905	Silver flowering stage	30.805
	SRR8316906	Gold flowering stage	75.608
	SRR8316907	Gold flowering stage	71.771
	SRR8316908	Gold flowering stage	98.099
SRP132670	SRR6706286	Control	48.845
	SRR6706287	Light intensity 50%	41.370
	SRR6706288	Light intensity 20%	35.940
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.158
	CNS0095593	Slightly white alabastrum(diploid) 2	27.657
	CNS0095594	Slightly white alabastrum(diploid) 3	28.991
	CNS0095595	Whole white alabastrum(diploid) 2	21.997
	CNS0095596	Whole white alabastrum(diploid) 3	17.617
	CNS0095597	Whole white alabastrum(diploid) 4	25.679
	CNS0095598	Silvery flower (diploied) 1	83.590
	CNS0095599	Silvery flower (diploied) 2	56.688
	CNS0095600	Silvery flower (diploied) 3	128.661
	CNS0095601	Golden flower (diploid) 1	94.694
	CNS0095602	Golden flower (diploid) 2	199.592
	CNS0095603	Golden flower (diploid) 3	189.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.853
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.433
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.202
	CNS0095610	Silvery flower (tetraploid) 1	180.996
	CNS0095611	Silvery flower (tetraploid) 2	154.319
	CNS0095612	Silvery flower (tetraploid) 3	61.995
	CNS0095613	Golden flower (tetraploid) 1	157.538
	CNS0095614	Golden flower (tetraploid) 2	232.364
	CNS0095615	Golden flower (tetraploid) 3	129.028
CRA001975	CRR073297	Stem 1	44.834
	CRR073298	Stem 2	42.566
	CRR073299	Stem 3	56.525
	CRR073300	Leaf 1	43.218
	CRR073301	Leaf 2	41.182
	CRR073302	Leaf 3	37.884
	CRR073303	Juvenile bud 1	44.256
	CRR073304	Juvenile bud 2	41.233
	CRR073305	Juvenile bud 3	51.132
	CRR073306	Third green 1	31.098
	CRR073307	Third green 2	33.291
	CRR073308	Third green 3	36.564
	CRR073309	Second white 1	78.988
	CRR073310	Second white 2	64.465
	CRR073311	Second white 3	53.181
	CRR073312	Silver flowering 1	45.252
	CRR073313	Silver flowering 2	59.665
	CRR073314	Silver flowering 3	49.885
	CRR073315	Gold flowering 1	49.717
	CRR073316	Gold flowering 2	50.152
	CRR073317	Gold flowering 3	62.111
	CRR073318	Tawny withering 1	96.588
	CRR073319	Tawny withering 2	60.281
	CRR073320	Tawny withering 3	78.699