Gene detail

Detail information of GWHGAAZE031923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602765.1	0	PREDICTED: probable serine/threonine-protein kinase At1g54610 [Nicotiana tomentosiformis]
COG	YP_003371239.1	9E-24	serine/threonine protein kinase
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	0	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|K4B0K3\|K4B0K3_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g098160.2.1}
TAIR10	AT1G54610.3	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67398409	67408519	+
GWHAAZE00000009	mRNA	67398409	67408519	+
GWHAAZE00000009	exon	67398409	67398789	+
GWHAAZE00000009	exon	67399783	67400067	+
GWHAAZE00000009	exon	67400511	67400828	+
GWHAAZE00000009	exon	67401482	67401709	+
GWHAAZE00000009	exon	67404222	67404322	+
GWHAAZE00000009	exon	67406985	67407102	+
GWHAAZE00000009	exon	67408256	67408519	+
GWHAAZE00000009	CDS	67398409	67398789	+
GWHAAZE00000009	CDS	67399783	67400067	+
GWHAAZE00000009	CDS	67400511	67400828	+
GWHAAZE00000009	CDS	67401482	67401709	+
GWHAAZE00000009	CDS	67404222	67404322	+
GWHAAZE00000009	CDS	67406985	67407102	+
GWHAAZE00000009	CDS	67408256	67408519	+

Transcript Sequence
>GWHTAAZE031961 ATGGGGTGTGTATTGGGTAAAGAGGTTTCGTCGGGCATAGTGTATGAGGATAAGGATGAGAAGAAGAAGAAGAGCAAGAGCAATAATTTGCCGGTTGAGCGTAGTGAGAGTTTAGAGGTTGAGGCGAGGAATAACGTTGAGAATGATAATGGGGTTAATGGTGTTGATGAAAGTGAAAAGGCAGAGAACGGGAATGGAGATAAAAGGCCGAGGGGTGAGAGGAGAAGATCGAGGCCTAATCCGAGGTTGAGTAATCCGCCTAGGCATAGACTTGGGGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTATCGACTTATGTTGGTGAAGCAATAGATGGTTGGCTTCCTCGACGTGCCGACACTTTTGAGAAAATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTACAAAGCCAAAGATACCATAACGGGTAAAATTGTTGCACTAAAGAAGGTAAGATTTGATAATTTAGAACCTGAGAGTGTGAAATTTATGGCTAGAGAGATTGTCATTTTACGGCGACTTGATCACCCCAATGTCATAAAATTAGAGGGTTTGGTTACATCAAGAATGTCGTGTAGTTTGTACCTGGTGTTTGAGTACATGGAGCATGATTTGGCTGGATTAGCTGCTAGCCCCATGATTACGTTCACGGAAGAACAGGTTAAATGTTACATTCATCAGCTATTATCTGGACTTGAGCATTGTCATAATCATAATGTGCTCCATCGTGACATTAAAGGGTCAAATCTACTTCTTGATAATAAAGGAGTCCTTAAGATAGCGGATTTTGGGTTGGCAACAATTTTCAATCCCAAGCACAAACATCCAATGACGAGTCGAGTGGTTACACTTTGGTATCGACCTCCAGAGCTTCTTCTTGGTGCTACCGATTATGGCGTTGGCATTGATTTATGGAGTGCAGGTTGCATTTTAGCCGAGTTATTGGCTGGAAAACCAATCATGCCTGGCCGTACAGAGGTGGAACAACTGCATAAGATATACAAGCTGTGTGGCTCACCTTCAGATGAATATTGGAAAAAGTCAAAGTTGCCTAATGCAACCTTATTTAAACCTCGAGAGCCTTACAAGCGATGCATTTCTCAGACATTTAAGCATTTCCCATCATCATCACTGCCGTTAATTGAAACTCTTCTTGCAATTGACCCGGCAGAGCGAAAAACAGCAACAGATGCATTGAATAGTGAATTCTTCACTACAGAACCATATGCTTGTGATCCTTCTAGCCTCCCGCAGTATCCTCCAAGCAAAGAGATGGATGCTAAACGATGGGATGACGAAGCTCGAAGGCAAAGAGCCGCTGGTAAATCCCAAGGTGACGGCCCTAAGAGAACGCACAGACGTGATCGGCCTGCTCGGGCTGGTGCTGCTCCAGAAGCCAATGCTGAGCTCCAATCCAATCTTGATAGGCGGCGTTTAGTGAACCATGCAAATGCAAAGAGCAAAAGTGAGAAGTTCCCACCCCCTCATGAGGATGGAGGTCTAGGCGTCCCGTTGGGTGTGTCTCAGCGGTTCGACCCACACTTTGTCCCAGCTGATGTGCCGTTCAGTTCAACCTTCACCTACCCGAAGGAACCTGTTCAAAATTGGTCAGGTCCTCTGGTTGACCCTGTTGCCAATGGCGCTCCAAGGCGAAAGAAGCAAAGTAACAGCATTAGTCAGGTTAAATGA

Network for GWHGAAZE031923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	122	406	1.60E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.641
	SRR3591706	second leaf	23.166
	SRR3591707	mature leaf	31.114
	SRR3591708	Shoot apex	26.624
	SRR3591709	Stem	44.359
	SRR3591710	White floral bud	37.236
	SRR3591711	White flower	48.110
	SRR3591712	Green floral bud	32.327
	SRR3591713	Yellow flower	48.181
SRP173429	SRR8316895	Juvenile bud stage	23.308
	SRR8316896	Juvenile bud stage	30.211
	SRR8316897	Juvenile bud stage	14.458
	SRR8316894	Third green stage	12.891
	SRR8316900	Third green stage	34.142
	SRR8316901	Third green stage	34.797
	SRR8316898	Complete white stage	20.495
	SRR8316899	Complete white stage	61.267
	SRR8316903	Complete white stage	34.006
	SRR8316902	Silver flowering stage	34.048
	SRR8316904	Silver flowering stage	42.039
	SRR8316905	Silver flowering stage	20.734
	SRR8316906	Gold flowering stage	59.041
	SRR8316907	Gold flowering stage	58.641
	SRR8316908	Gold flowering stage	60.610
SRP132670	SRR6706286	Control	30.197
	SRR6706287	Light intensity 50%	31.804
	SRR6706288	Light intensity 20%	32.973
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.355
	CNS0095593	Slightly white alabastrum(diploid) 2	23.098
	CNS0095594	Slightly white alabastrum(diploid) 3	20.654
	CNS0095595	Whole white alabastrum(diploid) 2	19.526
	CNS0095596	Whole white alabastrum(diploid) 3	16.917
	CNS0095597	Whole white alabastrum(diploid) 4	18.238
	CNS0095598	Silvery flower (diploied) 1	28.841
	CNS0095599	Silvery flower (diploied) 2	28.893
	CNS0095600	Silvery flower (diploied) 3	48.696
	CNS0095601	Golden flower (diploid) 1	27.347
	CNS0095602	Golden flower (diploid) 2	43.234
	CNS0095603	Golden flower (diploid) 3	45.765
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.686
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.583
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.132
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.172
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.301
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.024
	CNS0095610	Silvery flower (tetraploid) 1	51.223
	CNS0095611	Silvery flower (tetraploid) 2	50.175
	CNS0095612	Silvery flower (tetraploid) 3	36.379
	CNS0095613	Golden flower (tetraploid) 1	34.016
	CNS0095614	Golden flower (tetraploid) 2	46.969
	CNS0095615	Golden flower (tetraploid) 3	50.532
CRA001975	CRR073297	Stem 1	33.257
	CRR073298	Stem 2	32.275
	CRR073299	Stem 3	22.940
	CRR073300	Leaf 1	37.040
	CRR073301	Leaf 2	39.079
	CRR073302	Leaf 3	29.297
	CRR073303	Juvenile bud 1	26.507
	CRR073304	Juvenile bud 2	28.535
	CRR073305	Juvenile bud 3	32.040
	CRR073306	Third green 1	21.223
	CRR073307	Third green 2	22.418
	CRR073308	Third green 3	22.578
	CRR073309	Second white 1	18.767
	CRR073310	Second white 2	22.851
	CRR073311	Second white 3	22.298
	CRR073312	Silver flowering 1	16.425
	CRR073313	Silver flowering 2	13.451
	CRR073314	Silver flowering 3	15.910
	CRR073315	Gold flowering 1	18.635
	CRR073316	Gold flowering 2	26.169
	CRR073317	Gold flowering 3	14.246
	CRR073318	Tawny withering 1	36.516
	CRR073319	Tawny withering 2	36.454
	CRR073320	Tawny withering 3	37.234