Detail information of GWHGAAZE031909


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08580.11.0683E-147unnamed protein product [Coffea canephora]
Swissprottr|Q9FQ04|XRN4_ARATH5E-1215'-3' exoribonuclease 4
trEMBLtr|A0A068UJ53|A0A068UJ53_COFCA4E-148Coffea canephora DH200=94 genomic scaffold, scaffold_34 {ECO:0000313|EMBL:CDP08580.1}
TAIR10AT1G54490.15E-110exoribonuclease 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6710662267130122-
GWHAAZE00000009mRNA6710662267130122-
GWHAAZE00000009exon6713000967130122-
GWHAAZE00000009exon6712956967129805-
GWHAAZE00000009exon6712736167127463-
GWHAAZE00000009exon6712720067127276-
GWHAAZE00000009exon6712452467124586-
GWHAAZE00000009exon6712353967123703-
GWHAAZE00000009exon6712229967122376-
GWHAAZE00000009exon6712125267121372-
GWHAAZE00000009exon6712102467121052-
GWHAAZE00000009exon6712091067120954-
GWHAAZE00000009exon6711917167119248-
GWHAAZE00000009exon6711844867118547-
GWHAAZE00000009exon6711755067117658-
GWHAAZE00000009exon6711697767117051-
GWHAAZE00000009exon6711680367116850-
GWHAAZE00000009exon6711644067116556-
GWHAAZE00000009exon6711188167112009-
GWHAAZE00000009exon6711124767111323-
GWHAAZE00000009exon6711109567111135-
GWHAAZE00000009exon6711089367110967-
GWHAAZE00000009exon6711019767110347-
GWHAAZE00000009exon6710885967109057-
GWHAAZE00000009exon6710841567108490-
GWHAAZE00000009exon6710788667107968-
GWHAAZE00000009exon6710662267107219-
GWHAAZE00000009CDS6713000967130122-
GWHAAZE00000009CDS6712956967129805-
GWHAAZE00000009CDS6712736167127463-
GWHAAZE00000009CDS6712720067127276-
GWHAAZE00000009CDS6712452467124586-
GWHAAZE00000009CDS6712353967123703-
GWHAAZE00000009CDS6712229967122376-
GWHAAZE00000009CDS6712125267121372-
GWHAAZE00000009CDS6712102467121052-
GWHAAZE00000009CDS6712091067120954-
GWHAAZE00000009CDS6711917167119248-
GWHAAZE00000009CDS6711844867118547-
GWHAAZE00000009CDS6711755067117658-
GWHAAZE00000009CDS6711697767117051-
GWHAAZE00000009CDS6711680367116850-
GWHAAZE00000009CDS6711644067116556-
GWHAAZE00000009CDS6711188167112009-
GWHAAZE00000009CDS6711124767111323-
GWHAAZE00000009CDS6711109567111135-
GWHAAZE00000009CDS6711089367110967-
GWHAAZE00000009CDS6711019767110347-
GWHAAZE00000009CDS6710885967109057-
GWHAAZE00000009CDS6710841567108490-
GWHAAZE00000009CDS6710788667107968-
GWHAAZE00000009CDS6710662267107219-
Transcript Sequence

Network for GWHGAAZE031909

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03159.19XRN_N451761.40E-41
PF17846.2XRN_M2223089.30E-40
PF17846.2XRN_M3424001.40E-08
PF17846.2XRN_M5206759.80E-62
PF17846.2XRN_M7087764.70E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20553XRN4 MAPK signaling pathway - plant map04016

Gene Ontology

GO term OntologyName
GO:0006139biological_processnucleobase-containing compound metabolic process
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0004527molecular_functionexonuclease activity
GO:0004534molecular_function5'-3' exoribonuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.621
SRR3591706second leaf8.935
SRR3591707mature leaf9.322
SRR3591708Shoot apex12.850
SRR3591709Stem13.866
SRR3591710White floral bud12.899
SRR3591711White flower11.871
SRR3591712Green floral bud11.209
SRR3591713Yellow flower9.200
SRP173429 SRR8316895Juvenile bud stage 7.124
SRR8316896Juvenile bud stage 9.127
SRR8316897Juvenile bud stage 4.093
SRR8316894Third green stage 3.400
SRR8316900Third green stage 9.822
SRR8316901Third green stage 9.133
SRR8316898Complete white stage 1.885
SRR8316899Complete white stage 9.515
SRR8316903Complete white stage 5.867
SRR8316902Silver flowering stage3.414
SRR8316904Silver flowering stage6.560
SRR8316905Silver flowering stage2.533
SRR8316906Gold flowering stage 8.034
SRR8316907Gold flowering stage 6.806
SRR8316908Gold flowering stage 7.636
SRP132670SRR6706286Control9.345
SRR6706287Light intensity 50%8.874
SRR6706288Light intensity 20%9.854
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.528
CNS0095593Slightly white alabastrum(diploid) 24.747
CNS0095594Slightly white alabastrum(diploid) 33.689
CNS0095595Whole white alabastrum(diploid) 24.337
CNS0095596Whole white alabastrum(diploid) 32.763
CNS0095597Whole white alabastrum(diploid) 44.221
CNS0095598Silvery flower (diploied) 19.737
CNS0095599Silvery flower (diploied) 25.139
CNS0095600Silvery flower (diploied) 39.029
CNS0095601Golden flower (diploid) 17.489
CNS0095602Golden flower (diploid) 210.018
CNS0095603Golden flower (diploid) 39.709
CNS0095604Slightly white alabastrum(tetraploid) 16.220
CNS0095605Slightly white alabastrum(tetraploid) 24.729
CNS0095606Slightly white alabastrum(tetraploid) 311.739
CNS0095607Whole white alabastrum(tetraploid) 13.395
CNS0095608Whole white alabastrum(tetraploid) 23.608
CNS0095609Whole white alabastrum(tetraploid) 38.460
CNS0095610Silvery flower (tetraploid) 110.598
CNS0095611Silvery flower (tetraploid) 210.741
CNS0095612Silvery flower (tetraploid) 310.075
CNS0095613Golden flower (tetraploid) 15.604
CNS0095614Golden flower (tetraploid) 28.708
CNS0095615Golden flower (tetraploid) 38.976
CRA001975CRR073297Stem 111.029
CRR073298Stem 210.401
CRR073299Stem 34.303
CRR073300Leaf 110.240
CRR073301Leaf 29.673
CRR073302Leaf 34.368
CRR073303Juvenile bud 13.895
CRR073304Juvenile bud 23.024
CRR073305Juvenile bud 35.890
CRR073306Third green 12.042
CRR073307Third green 20.931
CRR073308Third green 32.445
CRR073309Second white 12.439
CRR073310Second white 23.128
CRR073311Second white 34.111
CRR073312Silver flowering 13.409
CRR073313Silver flowering 23.121
CRR073314Silver flowering 32.310
CRR073315Gold flowering 10.925
CRR073316Gold flowering 23.667
CRR073317Gold flowering 32.066
CRR073318Tawny withering 15.318
CRR073319Tawny withering 24.683
CRR073320Tawny withering 35.097