Gene detail

Detail information of GWHGAAZE031903

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625180.1	0	PREDICTED: probable serine/threonine-protein kinase WNK9 isoform X1 [Nicotiana tomentosiformis]
COG	YP_004284573.1	3E-20	putative serine/threonine protein kinase
Swissprot	tr\|Q9CAV6\|WNK1_ARATH	0	Serine/threonine-protein kinase WNK1
trEMBL	tr\|M1C1X6\|M1C1X6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400057980}
TAIR10	AT3G04910.1	0	with no lysine (K) kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	67026448	67031543	+
GWHAAZE00000009	mRNA	67026448	67031543	+
GWHAAZE00000009	exon	67026448	67026522	+
GWHAAZE00000009	exon	67026655	67026692	+
GWHAAZE00000009	exon	67026984	67027211	+
GWHAAZE00000009	exon	67027549	67027769	+
GWHAAZE00000009	exon	67028871	67029028	+
GWHAAZE00000009	exon	67029557	67030019	+
GWHAAZE00000009	exon	67030681	67031543	+
GWHAAZE00000009	CDS	67026448	67026522	+
GWHAAZE00000009	CDS	67026655	67026692	+
GWHAAZE00000009	CDS	67026984	67027211	+
GWHAAZE00000009	CDS	67027549	67027769	+
GWHAAZE00000009	CDS	67028871	67029028	+
GWHAAZE00000009	CDS	67029557	67030019	+
GWHAAZE00000009	CDS	67030681	67031543	+

Transcript Sequence
>GWHTAAZE031941 ATGAATGGTCTTTCAAATCTTGAACCAGATCAATCCGAGTTTGTTGAAATTGATCCAACTGGAAGATATGGCAGATACACTGAAATTCTTGGCAAAGGAGCTTCAAAGACTGTTTATAAGGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAAGTGAAGCTTTATGATTTCTTACAGAGCCCTGAGGATCTAGAGAGGCTCTATTGTGAAATTCATTTGCTCAAAACATTGAAGCACCAAAATATTATGAAGTTCTACACTTCTTGGGTTGATACTTCCAAGAGAAACATCAATTTTGTTACTGAGATGTTCACTTCTGGTACCCTAAGACAGTATAGGCAAAAGCACAAGAGAGTGAACATTAGAGCAGTGAAGCATTGGTGTAGGCAAATCTTGAGAGGGCTTCTCTATCTCCATAGCCATGATCCCCCCGTGATCCATAGAGATCTCAAGTGTGACAATATCTTTGTCAATGGAAACCAAGGGGAAGTTAAAATTGGCGATCTAGGCCTTGCGGCTATCCTCCGAAAATCTCATGCTGCTCATTGTGTTGGTACACCAGAGTTCATGGCTCCGGAAGTGTATGAAGAGGAATACAATGAATTAGTTGACATTTATTCTTTCGGAATGTGCATCTTGGAAATGGTCACCTTTGAATATCCATATAGTGAATGCACTCATCCTGCTCAGATCTATAAGAAAGTTATCTCGGGGAAAAAACCAGATGCTTTATACAAAGTGAAAGATCCATCGGTACGTCAATTTGTTGAGAAATGCTTGGCCACCGTGCCTCTTAGGCTCTCGGCGAGGGAGCTTCTAAACGATCCATTTCTCCGATTTGATGATTTTGAGCCTGATTTGACACCGATAGAGTGCCGGAGAGAGCTGGATTACATTGACCCTCTTCTAAGGCATCCTTTTCTTGATCTTGATTATGAAGGGAATTCTTTTAGTAACAGCTCCTTTAACGGATACTCCAACGTCACTGTTCCGTTTGAGGACCAAAATGGATGGGAGTATCATCCAAACGATATTGAACAAAGTGGAATTGAACTTTTTGAGTACAATGACGATGAGCACGAAGAACATTTTGAAGACCTTGACATTTCCATCAAAGGGAAGAAGAGAGAAGATGGTAGTATCTTTCTAAGACTCCGAATTTCTGACAAAGAAGGACGGATACGGAACATATACTTCCCATTTGACATCGAAATGGATACAGCATTGAGCGTTGCAACTGAAATGGTAGCTGAGCTCGATATAACCGACCAAGACGTGACTAAAATAGCTGATATGATTGATGGGGAGATCGCTTCATTGGTACCTGAATGGAAAACAGGACCGGGAATCGAAGAAACTCCCCGTTTTTCAAATTCAAACTACTGTGATAATTGTGCTTCAAACCATACCTCTAATGGCTCATTTACAAATTTCCTATCGAAAATGCCTAGCGGGAAGAATATGCAAATTTTGCAGTGCTGTGGAAATGGTTGTGCTTCTATGCACGGGCGGTTTGAAGAGATCACTTATCAAGTTGATAGTCCCCATGGTGGAAATAAATCAGGTCTTCTTCCGAGCAGATCCAAGGGCCACCATTACTCGAATAGTTGGGGTCACCACGAGAGCCTCGAATGCAGCTCGGAGGGGTCTGGAGAGAGCCACTCACTTGAAGAAAATGAAAAAGGCGAGAACAAAGTCTCATCAGATAGTCGAAAGTTCATGAGATCGTTTTCGGCTGCTCATTCGACTGCTGCGATTCTTCGGCCTTCAAATGATAATGAGGGCGATATCGAGCAAAAGATGAGATGGGTCAAAGCCAAATACCAAAAAGAATTGAGGGAACTTAGAGATCAACAAGTTTCATTTGTAGGTCCCGGGCCGACGATCCAATGCTCGCGCAGATGCGCGGTGATCAAGGAGTGCCCTAATGCAGAAGACATCGTTGCTGCTGGGAGTTTATGTAAGAAGTCATTGCTATCAAGAAATACTCATCATCATAGGACTGCATCTTTACCAGTTGATGCCATTGACATATGA

Network for GWHGAAZE031903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	281	2.30E-50
PF12202.9	OSR1_C	385	439	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.692
	SRR3591706	second leaf	9.210
	SRR3591707	mature leaf	5.411
	SRR3591708	Shoot apex	13.739
	SRR3591709	Stem	15.406
	SRR3591710	White floral bud	12.699
	SRR3591711	White flower	11.429
	SRR3591712	Green floral bud	11.042
	SRR3591713	Yellow flower	5.022
SRP173429	SRR8316895	Juvenile bud stage	7.691
	SRR8316896	Juvenile bud stage	9.483
	SRR8316897	Juvenile bud stage	3.331
	SRR8316894	Third green stage	5.326
	SRR8316900	Third green stage	11.850
	SRR8316901	Third green stage	10.320
	SRR8316898	Complete white stage	9.963
	SRR8316899	Complete white stage	26.116
	SRR8316903	Complete white stage	12.307
	SRR8316902	Silver flowering stage	5.962
	SRR8316904	Silver flowering stage	7.399
	SRR8316905	Silver flowering stage	3.256
	SRR8316906	Gold flowering stage	10.761
	SRR8316907	Gold flowering stage	8.581
	SRR8316908	Gold flowering stage	11.765
SRP132670	SRR6706286	Control	9.876
	SRR6706287	Light intensity 50%	10.372
	SRR6706288	Light intensity 20%	10.809
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.811
	CNS0095593	Slightly white alabastrum(diploid) 2	7.154
	CNS0095594	Slightly white alabastrum(diploid) 3	6.950
	CNS0095595	Whole white alabastrum(diploid) 2	6.010
	CNS0095596	Whole white alabastrum(diploid) 3	5.541
	CNS0095597	Whole white alabastrum(diploid) 4	5.472
	CNS0095598	Silvery flower (diploied) 1	9.889
	CNS0095599	Silvery flower (diploied) 2	7.322
	CNS0095600	Silvery flower (diploied) 3	12.608
	CNS0095601	Golden flower (diploid) 1	7.668
	CNS0095602	Golden flower (diploid) 2	9.473
	CNS0095603	Golden flower (diploid) 3	9.199
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.451
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.440
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.262
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.138
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.775
	CNS0095610	Silvery flower (tetraploid) 1	7.898
	CNS0095611	Silvery flower (tetraploid) 2	7.095
	CNS0095612	Silvery flower (tetraploid) 3	12.745
	CNS0095613	Golden flower (tetraploid) 1	4.713
	CNS0095614	Golden flower (tetraploid) 2	5.189
	CNS0095615	Golden flower (tetraploid) 3	5.950
CRA001975	CRR073297	Stem 1	16.943
	CRR073298	Stem 2	12.528
	CRR073299	Stem 3	12.334
	CRR073300	Leaf 1	13.388
	CRR073301	Leaf 2	13.907
	CRR073302	Leaf 3	10.293
	CRR073303	Juvenile bud 1	13.091
	CRR073304	Juvenile bud 2	12.323
	CRR073305	Juvenile bud 3	15.078
	CRR073306	Third green 1	10.965
	CRR073307	Third green 2	8.635
	CRR073308	Third green 3	8.564
	CRR073309	Second white 1	10.093
	CRR073310	Second white 2	9.033
	CRR073311	Second white 3	8.259
	CRR073312	Silver flowering 1	9.212
	CRR073313	Silver flowering 2	6.531
	CRR073314	Silver flowering 3	5.946
	CRR073315	Gold flowering 1	6.685
	CRR073316	Gold flowering 2	7.778
	CRR073317	Gold flowering 3	4.097
	CRR073318	Tawny withering 1	14.338
	CRR073319	Tawny withering 2	11.406
	CRR073320	Tawny withering 3	15.354