Detail information of GWHGAAZE031895


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08580.10unnamed protein product [Coffea canephora]
Swissprottr|Q9FQ04|XRN4_ARATH05'-3' exoribonuclease 4
trEMBLtr|A0A068UJ53|A0A068UJ53_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_34 {ECO:0000313|EMBL:CDP08580.1}
TAIR10AT1G54490.10exoribonuclease 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6675538866778262-
GWHAAZE00000009mRNA6675538866778262-
GWHAAZE00000009exon6677805666778262-
GWHAAZE00000009exon6677587166775973-
GWHAAZE00000009exon6677571066775786-
GWHAAZE00000009exon6677458866774779-
GWHAAZE00000009exon6677430866774427-
GWHAAZE00000009exon6677378166773843-
GWHAAZE00000009exon6677277766772941-
GWHAAZE00000009exon6677154266771619-
GWHAAZE00000009exon6677049566770615-
GWHAAZE00000009exon6677027466770301-
GWHAAZE00000009exon6676784966767966-
GWHAAZE00000009exon6676712966767224-
GWHAAZE00000009exon6676623166766337-
GWHAAZE00000009exon6676565866765732-
GWHAAZE00000009exon6676548466765531-
GWHAAZE00000009exon6676065666760784-
GWHAAZE00000009exon6676002166760097-
GWHAAZE00000009exon6675987066759909-
GWHAAZE00000009exon6675966966759747-
GWHAAZE00000009exon6675896966759120-
GWHAAZE00000009exon6675763166757735-
GWHAAZE00000009exon6675718866757263-
GWHAAZE00000009exon6675666366756745-
GWHAAZE00000009exon6675538866755985-
GWHAAZE00000009CDS6677805666778262-
GWHAAZE00000009CDS6677587166775973-
GWHAAZE00000009CDS6677571066775786-
GWHAAZE00000009CDS6677458866774779-
GWHAAZE00000009CDS6677430866774427-
GWHAAZE00000009CDS6677378166773843-
GWHAAZE00000009CDS6677277766772941-
GWHAAZE00000009CDS6677154266771619-
GWHAAZE00000009CDS6677049566770615-
GWHAAZE00000009CDS6677027466770301-
GWHAAZE00000009CDS6676784966767966-
GWHAAZE00000009CDS6676712966767224-
GWHAAZE00000009CDS6676623166766337-
GWHAAZE00000009CDS6676565866765732-
GWHAAZE00000009CDS6676548466765531-
GWHAAZE00000009CDS6676065666760784-
GWHAAZE00000009CDS6676002166760097-
GWHAAZE00000009CDS6675987066759909-
GWHAAZE00000009CDS6675966966759747-
GWHAAZE00000009CDS6675896966759120-
GWHAAZE00000009CDS6675763166757735-
GWHAAZE00000009CDS6675718866757263-
GWHAAZE00000009CDS6675666366756745-
GWHAAZE00000009CDS6675538866755985-
Transcript Sequence

Network for GWHGAAZE031895

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03159.19XRN_N12541.70E-97
PF17846.2XRN_M2783649.30E-40
PF17846.2XRN_M3984546.90E-08
PF17846.2XRN_M5347599.50E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20553XRN4 MAPK signaling pathway - plant map04016

Gene Ontology

GO term OntologyName
GO:0006139biological_processnucleobase-containing compound metabolic process
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0004527molecular_functionexonuclease activity
GO:0004534molecular_function5'-3' exoribonuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.879
SRR3591706second leaf8.242
SRR3591707mature leaf8.998
SRR3591708Shoot apex16.067
SRR3591709Stem14.856
SRR3591710White floral bud12.334
SRR3591711White flower14.143
SRR3591712Green floral bud12.394
SRR3591713Yellow flower9.836
SRP173429 SRR8316895Juvenile bud stage 11.941
SRR8316896Juvenile bud stage 14.616
SRR8316897Juvenile bud stage 5.550
SRR8316894Third green stage 6.048
SRR8316900Third green stage 13.838
SRR8316901Third green stage 13.868
SRR8316898Complete white stage 3.810
SRR8316899Complete white stage 14.334
SRR8316903Complete white stage 9.644
SRR8316902Silver flowering stage5.156
SRR8316904Silver flowering stage9.790
SRR8316905Silver flowering stage3.693
SRR8316906Gold flowering stage 14.923
SRR8316907Gold flowering stage 13.356
SRR8316908Gold flowering stage 13.014
SRP132670SRR6706286Control14.909
SRR6706287Light intensity 50%15.901
SRR6706288Light intensity 20%15.064
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.791
CNS0095593Slightly white alabastrum(diploid) 26.410
CNS0095594Slightly white alabastrum(diploid) 35.727
CNS0095595Whole white alabastrum(diploid) 26.683
CNS0095596Whole white alabastrum(diploid) 33.669
CNS0095597Whole white alabastrum(diploid) 46.106
CNS0095598Silvery flower (diploied) 113.507
CNS0095599Silvery flower (diploied) 28.173
CNS0095600Silvery flower (diploied) 317.149
CNS0095601Golden flower (diploid) 111.043
CNS0095602Golden flower (diploid) 215.766
CNS0095603Golden flower (diploid) 314.847
CNS0095604Slightly white alabastrum(tetraploid) 15.374
CNS0095605Slightly white alabastrum(tetraploid) 24.393
CNS0095606Slightly white alabastrum(tetraploid) 313.002
CNS0095607Whole white alabastrum(tetraploid) 13.492
CNS0095608Whole white alabastrum(tetraploid) 22.757
CNS0095609Whole white alabastrum(tetraploid) 38.991
CNS0095610Silvery flower (tetraploid) 111.500
CNS0095611Silvery flower (tetraploid) 211.321
CNS0095612Silvery flower (tetraploid) 310.032
CNS0095613Golden flower (tetraploid) 15.734
CNS0095614Golden flower (tetraploid) 29.845
CNS0095615Golden flower (tetraploid) 312.134
CRA001975CRR073297Stem 116.022
CRR073298Stem 213.073
CRR073299Stem 37.340
CRR073300Leaf 114.611
CRR073301Leaf 213.925
CRR073302Leaf 36.132
CRR073303Juvenile bud 16.436
CRR073304Juvenile bud 24.633
CRR073305Juvenile bud 39.657
CRR073306Third green 13.164
CRR073307Third green 22.814
CRR073308Third green 33.541
CRR073309Second white 13.485
CRR073310Second white 24.875
CRR073311Second white 36.677
CRR073312Silver flowering 15.015
CRR073313Silver flowering 25.401
CRR073314Silver flowering 34.631
CRR073315Gold flowering 12.440
CRR073316Gold flowering 25.781
CRR073317Gold flowering 32.986
CRR073318Tawny withering 17.693
CRR073319Tawny withering 28.027
CRR073320Tawny withering 38.999