Gene detail

Detail information of GWHGAAZE031888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625180.1	0	PREDICTED: probable serine/threonine-protein kinase WNK9 isoform X1 [Nicotiana tomentosiformis]
COG	YP_003248214.1	4E-20	serine/threonine protein kinase
Swissprot	tr\|Q9CAV6\|WNK1_ARATH	0	Serine/threonine-protein kinase WNK1
trEMBL	tr\|M1C1X6\|M1C1X6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400057980}
TAIR10	AT3G04910.1	0	with no lysine (K) kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66664760	66669841	+
GWHAAZE00000009	mRNA	66664760	66669841	+
GWHAAZE00000009	exon	66664760	66664834	+
GWHAAZE00000009	exon	66664967	66665004	+
GWHAAZE00000009	exon	66665297	66665524	+
GWHAAZE00000009	exon	66665864	66666084	+
GWHAAZE00000009	exon	66667184	66667341	+
GWHAAZE00000009	exon	66667866	66668328	+
GWHAAZE00000009	exon	66668726	66668750	+
GWHAAZE00000009	exon	66668986	66669841	+
GWHAAZE00000009	CDS	66664760	66664834	+
GWHAAZE00000009	CDS	66664967	66665004	+
GWHAAZE00000009	CDS	66665297	66665524	+
GWHAAZE00000009	CDS	66665864	66666084	+
GWHAAZE00000009	CDS	66667184	66667341	+
GWHAAZE00000009	CDS	66667866	66668328	+
GWHAAZE00000009	CDS	66668726	66668750	+
GWHAAZE00000009	CDS	66668986	66669841	+

Transcript Sequence
>GWHTAAZE031926 ATGAATGGTCTTTCAAATCTTGAACCAGATCAATCCGAGTTTGTTGAAATTGATCCAACTGGAAGATATGGCAGATACACTGAAATTCTTGGCAAAGGAGCTTCAAAGACTGTTTATAAGGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAACCAAGTGAAGCTTTATGATTTCTTACAGAGCCCTGAGGATCTAGAGAGGCTCTATTGTGAAATTCATTTGCTCAAAACATTGAAGCACCAAAATATTATGAAGTTCTACACTTCTTGGGTTGATACTTCCAAGAGAAACATCAATTTTGTTACTGAGATGTTCACTTCTGGTACCCTAAGACAGTATAGGCAAAAGCACAAGAGAGTGAACATTAGAGCAGTGAAGCATTGGTGTAGGCAAATCTTGAGAGGGCTTCTCTATCTCCATAGCCATGATCCCCCCGTGATCCATAGAGATCTCAAGTGTGACAATATCTTTGTCAATGGAAACCAAGGGGAAGTTAAAATCGGCGATCTAGGCCTTGCGGCTATCCTCCGAAAATCTCATGCTGCTCATTGTGTTGGTACACCAGAGTTCATGGCTCCGGAAGTGTATGAAGAGGAATACAATGAATTAGTTGACATTTATTCTTTCGGAATGTGCATCTTGGAAATGGTCACCTTTGAATATCCATATAGTGAATGCACTCATCCTGCTCAGATCTATAAGAAAGTTATCTCGGGGAAAAAACCAGATGCTTTATACAAAGTGAAAGATCCATCGGTACGTCAATTTGTTGAGAAATGCTTGGCCACCGTGCCTCTTAGGCTCTCGGCGAGGGAGCTTCTAAACGATCCATTTCTCCGATTTGATGATTTTGAGCCTGATTTGACACCGATAGAGTGCCGGAGAGAGCTGGATTACATTGACCCTCTTCTAAGGCATCCTTTTCTTGATCTTGATTATGAAGGGAATTCTTTTAGTAACAGCTCCTTTAACGGATACTCCAACGTCACTGTTCCGTTTGAGGACCAAAATGGATGGGAGTATCATCCAAACGATATTGAACAAAGTGGAATTGAACTTTTTGAGTACAATGACGATGAGCACGAAGAACATTTTGAAGACCTTGACATTTCCATCAAAGGGAAGAAGAGAGAAGATGGTAGTATCTTTCTAAGACTCCGAATTTCTGACAAAGAAGAGAGCAGGGTTGGTGTTTATTTTTGGACGGATCTGAACATATACTTCCCATTTGACATCGAAATGGATACAGCATTGAGCGTTGCAACTGAAATGGTAGCTGAGCTCGATATAACCGACCAAGACGTGACTAAAATAGCTGATATGATTGATGGGGAGATCGCTTCATTGGTACCTGAATGGAAAACAGGACCGGAATCGAAGAAACTCCCGGTTTTTCAAATTCAAACTACTGTGATAATTGTGCTTCAAACCATACCTCTAATGGCTCATTTACAAATTTCCTATCGAAAATGCCTAGCGGGAAGAATATGCAAATTTTGCAGTGCTGTGGAAATGGTTGTGCTTCTATGCACGGGCGGTTTGAAGAGATCACTTATCAAGTTGATAGTCCCCATGGTGGAAATAAATCAGGTCTTCTTCCGAGCAGATCCAAGGGCCACCATTACTCGAATAGTTGGGGTCACCACGAGCCTCGAATGCAGCTCGGAGGGGTCTGGAGAGAGCCACTCACTTGAAGAAAATGAAAAAGACGAGAACAAAGTCTCATCAGATGGTCGAAAGTTCATGAGATCGTTTTCGGCTGCTCATTCGACTGCTGCGATTCTTCGGCCTTCAAATGATAATGAGGGCGATATCGAGCAAAAGATGAGATGGGTCAAAGCCAAATACCAAAAAGAATTGAGGGAACTTAGAGATCAACAAGTTTCATTTGTAGGTCCCGGGCCGACGATTCAACACTCAAGAGATGCTGTGATCAAGGAGTGCCCTAATGCAGAAGACATCGTTGCTGCTGGGAGTTTATGTAAGAAGTCATTGCTATCAAGAAATACTCATCATCATAGGACTGCATCTTTACCAGTTGATGCCATTGACATATGA

Network for GWHGAAZE031888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	281	2.30E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.423
	SRR3591706	second leaf	6.374
	SRR3591707	mature leaf	3.810
	SRR3591708	Shoot apex	10.235
	SRR3591709	Stem	11.512
	SRR3591710	White floral bud	10.553
	SRR3591711	White flower	7.080
	SRR3591712	Green floral bud	9.277
	SRR3591713	Yellow flower	4.072
SRP173429	SRR8316895	Juvenile bud stage	3.656
	SRR8316896	Juvenile bud stage	3.879
	SRR8316897	Juvenile bud stage	2.179
	SRR8316894	Third green stage	2.371
	SRR8316900	Third green stage	5.389
	SRR8316901	Third green stage	5.513
	SRR8316898	Complete white stage	3.749
	SRR8316899	Complete white stage	10.910
	SRR8316903	Complete white stage	5.194
	SRR8316902	Silver flowering stage	2.811
	SRR8316904	Silver flowering stage	3.841
	SRR8316905	Silver flowering stage	1.872
	SRR8316906	Gold flowering stage	3.995
	SRR8316907	Gold flowering stage	3.668
	SRR8316908	Gold flowering stage	7.103
SRP132670	SRR6706286	Control	3.855
	SRR6706287	Light intensity 50%	4.533
	SRR6706288	Light intensity 20%	4.700
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.974
	CNS0095593	Slightly white alabastrum(diploid) 2	2.942
	CNS0095594	Slightly white alabastrum(diploid) 3	2.120
	CNS0095595	Whole white alabastrum(diploid) 2	2.088
	CNS0095596	Whole white alabastrum(diploid) 3	2.427
	CNS0095597	Whole white alabastrum(diploid) 4	1.739
	CNS0095598	Silvery flower (diploied) 1	4.786
	CNS0095599	Silvery flower (diploied) 2	2.336
	CNS0095600	Silvery flower (diploied) 3	4.656
	CNS0095601	Golden flower (diploid) 1	3.245
	CNS0095602	Golden flower (diploid) 2	3.682
	CNS0095603	Golden flower (diploid) 3	4.625
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.103
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.278
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.266
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.471
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.740
	CNS0095610	Silvery flower (tetraploid) 1	5.549
	CNS0095611	Silvery flower (tetraploid) 2	5.107
	CNS0095612	Silvery flower (tetraploid) 3	9.877
	CNS0095613	Golden flower (tetraploid) 1	2.828
	CNS0095614	Golden flower (tetraploid) 2	3.391
	CNS0095615	Golden flower (tetraploid) 3	5.030
CRA001975	CRR073297	Stem 1	7.500
	CRR073298	Stem 2	6.591
	CRR073299	Stem 3	4.882
	CRR073300	Leaf 1	5.793
	CRR073301	Leaf 2	5.958
	CRR073302	Leaf 3	4.195
	CRR073303	Juvenile bud 1	6.291
	CRR073304	Juvenile bud 2	6.044
	CRR073305	Juvenile bud 3	6.681
	CRR073306	Third green 1	5.009
	CRR073307	Third green 2	3.036
	CRR073308	Third green 3	4.245
	CRR073309	Second white 1	3.243
	CRR073310	Second white 2	5.081
	CRR073311	Second white 3	3.895
	CRR073312	Silver flowering 1	3.073
	CRR073313	Silver flowering 2	2.210
	CRR073314	Silver flowering 3	3.555
	CRR073315	Gold flowering 1	2.099
	CRR073316	Gold flowering 2	3.001
	CRR073317	Gold flowering 3	1.874
	CRR073318	Tawny withering 1	6.380
	CRR073319	Tawny withering 2	5.155
	CRR073320	Tawny withering 3	7.785