Detail information of GWHGAAZE031882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010659891.10PREDICTED: serine/threonine-protein kinase Nek2-like isoform X2 [Vitis vinifera]
COGYP_006527485.16E-21serine/threonine protein kinase with PASTA sensor(s)
Swissprottr|Q2QMH1|NEK2_ORYSJ0Serine/threonine-protein kinase Nek2
trEMBLtr|F6HTS7|F6HTS7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58088.1}
TAIR10AT3G04810.22E-149NIMA-related kinase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6650913766519132-
GWHAAZE00000009mRNA6650913766519132-
GWHAAZE00000009exon6650913766509841-
GWHAAZE00000009exon6651228866512722-
GWHAAZE00000009exon6651365066513701-
GWHAAZE00000009exon6651546066515533-
GWHAAZE00000009exon6651727666517325-
GWHAAZE00000009exon6651744366517524-
GWHAAZE00000009exon6651762066517669-
GWHAAZE00000009exon6651775366517795-
GWHAAZE00000009exon6651789666517976-
GWHAAZE00000009exon6651814866518193-
GWHAAZE00000009exon6651829766518343-
GWHAAZE00000009exon6651907366519132-
GWHAAZE00000009CDS6651907366519132-
GWHAAZE00000009CDS6651829766518343-
GWHAAZE00000009CDS6651814866518193-
GWHAAZE00000009CDS6651789666517976-
GWHAAZE00000009CDS6651775366517795-
GWHAAZE00000009CDS6651762066517669-
GWHAAZE00000009CDS6651744366517524-
GWHAAZE00000009CDS6651727666517325-
GWHAAZE00000009CDS6651546066515533-
GWHAAZE00000009CDS6651365066513701-
GWHAAZE00000009CDS6651228866512722-
GWHAAZE00000009CDS6650913766509841-
Transcript Sequence

Network for GWHGAAZE031882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase232043.60E-45
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyNEK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.396
SRR3591706second leaf24.283
SRR3591707mature leaf7.183
SRR3591708Shoot apex61.173
SRR3591709Stem21.965
SRR3591710White floral bud11.653
SRR3591711White flower8.560
SRR3591712Green floral bud34.679
SRR3591713Yellow flower3.428
SRP173429 SRR8316895Juvenile bud stage 16.082
SRR8316896Juvenile bud stage 17.675
SRR8316897Juvenile bud stage 9.439
SRR8316894Third green stage 10.085
SRR8316900Third green stage 23.494
SRR8316901Third green stage 21.039
SRR8316898Complete white stage 2.317
SRR8316899Complete white stage 23.323
SRR8316903Complete white stage 4.718
SRR8316902Silver flowering stage1.211
SRR8316904Silver flowering stage1.931
SRR8316905Silver flowering stage1.230
SRR8316906Gold flowering stage 2.316
SRR8316907Gold flowering stage 2.254
SRR8316908Gold flowering stage 2.387
SRP132670SRR6706286Control17.317
SRR6706287Light intensity 50%16.911
SRR6706288Light intensity 20%18.444
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.348
CNS0095593Slightly white alabastrum(diploid) 219.554
CNS0095594Slightly white alabastrum(diploid) 313.803
CNS0095595Whole white alabastrum(diploid) 213.078
CNS0095596Whole white alabastrum(diploid) 310.336
CNS0095597Whole white alabastrum(diploid) 410.110
CNS0095598Silvery flower (diploied) 117.719
CNS0095599Silvery flower (diploied) 214.939
CNS0095600Silvery flower (diploied) 36.824
CNS0095601Golden flower (diploid) 112.090
CNS0095602Golden flower (diploid) 28.650
CNS0095603Golden flower (diploid) 37.873
CNS0095604Slightly white alabastrum(tetraploid) 114.709
CNS0095605Slightly white alabastrum(tetraploid) 214.856
CNS0095606Slightly white alabastrum(tetraploid) 324.139
CNS0095607Whole white alabastrum(tetraploid) 17.277
CNS0095608Whole white alabastrum(tetraploid) 24.879
CNS0095609Whole white alabastrum(tetraploid) 316.369
CNS0095610Silvery flower (tetraploid) 12.697
CNS0095611Silvery flower (tetraploid) 24.385
CNS0095612Silvery flower (tetraploid) 31.879
CNS0095613Golden flower (tetraploid) 10.791
CNS0095614Golden flower (tetraploid) 22.468
CNS0095615Golden flower (tetraploid) 31.064
CRA001975CRR073297Stem 134.126
CRR073298Stem 231.359
CRR073299Stem 327.073
CRR073300Leaf 134.110
CRR073301Leaf 230.296
CRR073302Leaf 323.217
CRR073303Juvenile bud 118.993
CRR073304Juvenile bud 212.866
CRR073305Juvenile bud 319.705
CRR073306Third green 10.894
CRR073307Third green 21.062
CRR073308Third green 31.068
CRR073309Second white 10.844
CRR073310Second white 20.776
CRR073311Second white 30.470
CRR073312Silver flowering 10.171
CRR073313Silver flowering 20.200
CRR073314Silver flowering 30.288
CRR073315Gold flowering 15.666
CRR073316Gold flowering 29.311
CRR073317Gold flowering 37.415
CRR073318Tawny withering 122.978
CRR073319Tawny withering 218.163
CRR073320Tawny withering 323.826