Gene detail

Detail information of GWHGAAZE031874

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP34648.1	0	hypothetical protein JCGZ_11961 [Jatropha curcas]
COG	YP_545321.1	2E-76	ATP-dependent helicase HrpA
Swissprot	tr\|Q38953\|DHX8_ARATH	4E-85	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|A0A067KI18\|A0A067KI18_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP34648.1}
TAIR10	AT5G04895.1	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66297872	66325162	-
GWHAAZE00000009	mRNA	66297872	66325162	-
GWHAAZE00000009	exon	66297872	66298345	-
GWHAAZE00000009	exon	66299165	66299275	-
GWHAAZE00000009	exon	66299390	66299542	-
GWHAAZE00000009	exon	66300555	66300614	-
GWHAAZE00000009	exon	66300719	66301027	-
GWHAAZE00000009	exon	66304092	66304240	-
GWHAAZE00000009	exon	66304359	66304428	-
GWHAAZE00000009	exon	66306992	66307195	-
GWHAAZE00000009	exon	66307925	66308005	-
GWHAAZE00000009	exon	66308088	66308117	-
GWHAAZE00000009	exon	66315344	66315616	-
GWHAAZE00000009	exon	66317207	66317377	-
GWHAAZE00000009	exon	66318150	66318280	-
GWHAAZE00000009	exon	66318369	66318528	-
GWHAAZE00000009	exon	66318667	66318855	-
GWHAAZE00000009	exon	66319874	66319969	-
GWHAAZE00000009	exon	66320424	66320660	-
GWHAAZE00000009	exon	66320765	66320852	-
GWHAAZE00000009	exon	66320965	66321119	-
GWHAAZE00000009	exon	66324839	66325162	-
GWHAAZE00000009	five_prime_UTR	66325121	66325162	-
GWHAAZE00000009	CDS	66324839	66325120	-
GWHAAZE00000009	CDS	66320965	66321119	-
GWHAAZE00000009	CDS	66320765	66320852	-
GWHAAZE00000009	CDS	66320424	66320660	-
GWHAAZE00000009	CDS	66319874	66319969	-
GWHAAZE00000009	CDS	66318667	66318855	-
GWHAAZE00000009	CDS	66318369	66318528	-
GWHAAZE00000009	CDS	66318150	66318280	-
GWHAAZE00000009	CDS	66317207	66317377	-
GWHAAZE00000009	CDS	66315344	66315616	-
GWHAAZE00000009	CDS	66308088	66308117	-
GWHAAZE00000009	CDS	66307925	66308005	-
GWHAAZE00000009	CDS	66306992	66307195	-
GWHAAZE00000009	CDS	66304359	66304428	-
GWHAAZE00000009	CDS	66304092	66304240	-
GWHAAZE00000009	CDS	66300719	66301027	-
GWHAAZE00000009	CDS	66300555	66300614	-
GWHAAZE00000009	CDS	66299390	66299542	-
GWHAAZE00000009	CDS	66299165	66299275	-
GWHAAZE00000009	CDS	66297872	66298345	-

Transcript Sequence
>GWHTAAZE031912 TTGAAGCATAATCGCCATGCCCAAAATCTTTTTTCCGTTAGAATGCATTTCAGGCTAGGTTTTCTCCTTGTAAGGCAAAAGTCATCCCTTTTTTCAGCACTTTGGTCACCGTCGAATTGTAATAGGTTTTCGACAGTTGCTGACAATGGCTGGTTTGGTCTTCGAATACACCAGCCTCAAGGAGCTGCTTCAGTCACTGATGGGGCTTCTATCTGCCGAAGTTTGTCGGCTTTTTTATTATCCGGCGGGCACCGGTCGTTCTCTGGTTATGCCGTGGAGCAGTTCTCCGACGATGAGTACGAGTGCGATTACGAGAATCACCCGGCATCATCCTCGGTGGCCAACATTGACGAGTGGAAGTGGAAACTTAGCTTGCTATTACGCAATGAAAAAGACCAAGAAATAGTTTCCAGAGATAAAAGAGACCGGCGAGACTATGAGCAAATATCTAACCTTGCCAAAAGGATGGGCCTTTACTGTGAAATATACGGAAAAGTGGTGGTAGCGAGCAAGGCGCCTCTTCCTAATTACAGACCAGATCTTGATGATAAGCGGCCTCAAAGGGAGGTGGTTGTACCACTAAGCTTGCAAAGGAGAGTAGAGGGTCTACTGCAGGAACACGTTGACCGAATGGAGTTAAGTTCCAGAAAGGTCAGTGGCACTTCAGCTGACAATAAAGCTACTGATCAGGTTGAAGATGGGAATCCAGATGATAATCAAGATTCCTTCCTAGATGGGTCTGTCATGGAAAAGGTTCTTCAGAGGAGGAGCTTGCGAATGCGGAATATGCAGAGAACTTGGCAGGAATCGCCAGAAGGCAGGAGGATGCTAGATTTACGGAGATCTCTCCCTGCATTCAAAGAGAAGGAAAGGCTGCTCCAAGCAATTGCACAGAATCAGGTTATTGTAATTTCTGGGGAGACAGGATGCGGGAAGACCACTCAACTACCTCAATACATATTAGAGTCTGAAATAGAATCTGGACGTGGAGCATTTTGTAACATAATTTGTACACAACCTCGAAGAATATCTGCCATGGCTGTCGCAGATCGAGTGTCTACAGAAAGAGGAGAGCCTCTTGGTGAATCAGTTGGCTACAAAGTTCGATTAGAGGGAATGAAAGGAAAGAATACCCATCTGCTCTTTTGTACTAGTGGTATTTTGCTTCGGCGGCTATTGAGTGACCGTAACCTGAACGGTGTTACCCATGTTTTTGTTGATGAAATTCATGAGAGAGGCATGAACGAAGACTTCCTATTGATTGTGTTGAAGGATCTTCTTCCACGGCGTCGAGATTTGAGATTGATTCTAATGAGTGCTACTCTGAATGCCGAGCTGTTTTCCAAATTTTTTGGACGAGCACCAACAATTCATATCCCAGGCTTTACATACCCAGTGAGAGCACATTTTCTGGAAGATGTATTGGAAGTGACTGGATATAAGTTGACTTCTTTCAATCAAATTGATGATTATGGCCAAGAAAAGCTGTGGAAAACGCAAAAGCAGCTCGTGCCTCGGAAAAGAAAGAACCAGATCACTACTCTTGTTGAGGATGCTCTTAACCAATCGAGCTTTGAAAATTATAGCTCAAGGGCACGTGATTCTCTGTCTTGCTGGACACCTGACTGTATTGGATTCAATCTTATCGAGGCTGTATTGTGCCACATATGTCGTAAGGAACGGCCAGGTGCTGTATTAGTATTTATGACCGGCTGGGAAGATATTAGTAGTTTGAGGGATCAAGTTAAAGCTCACCCGCTATTAGGGGACCCCAACAGGGTTCTGCTTCTCACATGCCATGGTTCCATGGCCACATCTGAACAGAAACTCATATTTGAGAAGGCACCTCCTAATGCGAAGGAGACTACTTATGATGCTTTAAATAATACTCCTTGTCTACTACCTTCATGGATATCACAAGCTTCTGCCCGGCAAAGAAGAGGTAGAGCCGGGCGTGTGCAGCCTGGGGAGTGCTACCACCTATATCCCCGATGTGTTTACGAAGCTTTTGCCGAATATCAACTTCCCGAACTTTTGAGAACTCCTTTGAACTCGCTTTGCTTGCAAATCAAAAGTTTGCAGGTCGGAAGTATTGGAGAATTTTTGTCAGCTGCTCTACAGCCACCAGAACCACTCGCTGTACAAAATGCTGTTGATTTTCTGAAGATGATTGGAGCACTAGATGAGAATGAAAATCTTACGCATCTTGGAAAGTTTTTGGCAATGCTTCCCTTGGATCCCAAGCTAGGAAAAATGTTAATCATGGGTACTATCTTTCGTTGCTTTGATCCTGTTCTCACAATTGTGGCCGGACTTAGCGTCAGGGATCCTTTTCTCTTGCCTCAAGACAAAAAGGATTTAGCAGGGACAGCAAAATCTAGATTCTCTGCAAAGGACTACAGTGATCATATGGCATTAGTGCGTGCATACGAAGGATGGAAAGATGCAGAGAGAGAAGGAACTGCATATGAATACTGCTGGAGAAATTTCCTTTCTTCTCAAACACTTCAAGCTATTCATTCTCTTAGAAAGCAGTTTAGCTTCATTTTGAAGGATGCTGGATTGCTAGATTCAGATGCAGGCACTAACAACAGACTAAGTCACAACCAGCCTTTAGTTCGTGCAGTTATATGTTCCGGCCTCTTTCCTGGAATAGCATCTGTAGTGCACAGAGAGACATCCATGTCCTTCAAAACAATGGATGATGGCCAGGTCTTACTCTATGCAAATTCTGTAAATGCACGTTACCAGACTATTCCCTACCCATGGCTGGTCTTTGGCGAAAAAGTGAAGGTCAATACTGTCTTCATACGTGATTCGACTGGTGTATCTGATTCGATTCTAATCCTTTTTGGTGGTAATCTATGCAATGGAGTGATGGCTGGGCATCTGAAAATGTTGGACGGATATATTGATTTCTTCATGGATCCTACTTTGGCGGATTGCTATGCAAGGCTAAAGCAGGAACTTGACAAGATTCTCCAAAAGAAGCTTGAGGATCCTAGCATTGACGTCCACAAACAAGGCAAGTATTTAATGCTAGCCGTTCAAGAGCTAGTATCTGGAGACCAATGCGAAGGCCGGTTTGTGTTTGGACGGGAAAGCAAGAAGGCAAAGGTGGTGACTACCGAAACCGACAGGTTCACGAGAGATGGTGGGAACCCTAAGAGCCTCCTTCAAACACTGTTGATGAGGGCAGGTCACTCCCCTCCCAAATACAAAACAAAGCATCTAAAGACCAATGAGTTTAGGGCTCTGGTTGAGTTCAAGGGGATGCAGTTTGTGGGTAAGCCCAAAAAGAACAAGCAGCTCGCAGAGAGGGACGCGGCTATTGAGGCGTTGGCTTGGTTGACTCACACTTCCGATAATAACAAGGAGGAAGAGGATAATTCTCCACCCGATGTTACCGATAACATGCTCAAACTTCTTGGTAGGCGGCGTAGGTCAAAGCGCCGCCCTGGTTGA

Network for GWHGAAZE031874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	277	430	6.00E-07
PF04408.24	HA2	703	778	1.10E-20
PF07717.17	OB_NTP_bind	859	940	1.70E-14
PF00035.27	dsrm	1041	1103	3.30E-06

Protein Sequence

>GWHPAAZE031894
MHFRLGFLLVRQKSSLFSALWSPSNCNRFSTVADNGWFGLRIHQPQGAASVTDGASICRSLSAFLLSGGHRSFSGYAVEQFSDDEYECDYENHPASSSVANIDEWKWKLSLLLRNEKDQEIVSRDKRDRRDYEQISNLAKRMGLYCEIYGKVVVASKAPLPNYRPDLDDKRPQREVVVPLSLQRRVEGLLQEHVDRMELSSRKVSGTSADNKATDQVEDGNPDDNQDSFLDGSVMEKVLQRRSLRMRNMQRTWQESPEGRRMLDLRRSLPAFKEKERLLQAIAQNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVADRVSTERGEPLGESVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSKFFGRAPTIHIPGFTYPVRAHFLEDVLEVTGYKLTSFNQIDDYGQEKLWKTQKQLVPRKRKNQITTLVEDALNQSSFENYSSRARDSLSCWTPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQVKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKAPPNAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKMIGALDENENLTHLGKFLAMLPLDPKLGKMLIMGTIFRCFDPVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGTAYEYCWRNFLSSQTLQAIHSLRKQFSFILKDAGLLDSDAGTNNRLSHNQPLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGNLCNGVMAGHLKMLDGYIDFFMDPTLADCYARLKQELDKILQKKLEDPSIDVHKQGKYLMLAVQELVSGDQCEGRFVFGRESKKAKVVTTETDRFTRDGGNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNNKEEEDNSPPDVTDNMLKLLGRRRRSKRRPG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14442	DHX36, RHAU	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.993
	SRR3591706	second leaf	5.211
	SRR3591707	mature leaf	7.119
	SRR3591708	Shoot apex	9.990
	SRR3591709	Stem	8.332
	SRR3591710	White floral bud	9.824
	SRR3591711	White flower	14.052
	SRR3591712	Green floral bud	11.289
	SRR3591713	Yellow flower	9.946
SRP173429	SRR8316895	Juvenile bud stage	6.157
	SRR8316896	Juvenile bud stage	7.926
	SRR8316897	Juvenile bud stage	5.064
	SRR8316894	Third green stage	4.507
	SRR8316900	Third green stage	10.701
	SRR8316901	Third green stage	9.083
	SRR8316898	Complete white stage	3.227
	SRR8316899	Complete white stage	13.716
	SRR8316903	Complete white stage	6.792
	SRR8316902	Silver flowering stage	4.430
	SRR8316904	Silver flowering stage	7.045
	SRR8316905	Silver flowering stage	2.798
	SRR8316906	Gold flowering stage	9.260
	SRR8316907	Gold flowering stage	8.274
	SRR8316908	Gold flowering stage	10.960
SRP132670	SRR6706286	Control	9.169
	SRR6706287	Light intensity 50%	9.481
	SRR6706288	Light intensity 20%	9.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.533
	CNS0095593	Slightly white alabastrum(diploid) 2	5.081
	CNS0095594	Slightly white alabastrum(diploid) 3	4.726
	CNS0095595	Whole white alabastrum(diploid) 2	5.782
	CNS0095596	Whole white alabastrum(diploid) 3	4.413
	CNS0095597	Whole white alabastrum(diploid) 4	4.186
	CNS0095598	Silvery flower (diploied) 1	6.080
	CNS0095599	Silvery flower (diploied) 2	5.131
	CNS0095600	Silvery flower (diploied) 3	9.743
	CNS0095601	Golden flower (diploid) 1	3.964
	CNS0095602	Golden flower (diploid) 2	9.110
	CNS0095603	Golden flower (diploid) 3	8.733
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.519
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.018
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.595
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.179
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.033
	CNS0095610	Silvery flower (tetraploid) 1	12.723
	CNS0095611	Silvery flower (tetraploid) 2	13.212
	CNS0095612	Silvery flower (tetraploid) 3	15.157
	CNS0095613	Golden flower (tetraploid) 1	5.667
	CNS0095614	Golden flower (tetraploid) 2	8.188
	CNS0095615	Golden flower (tetraploid) 3	7.466
CRA001975	CRR073297	Stem 1	9.834
	CRR073298	Stem 2	8.283
	CRR073299	Stem 3	6.007
	CRR073300	Leaf 1	9.719
	CRR073301	Leaf 2	7.360
	CRR073302	Leaf 3	6.632
	CRR073303	Juvenile bud 1	7.178
	CRR073304	Juvenile bud 2	4.195
	CRR073305	Juvenile bud 3	10.678
	CRR073306	Third green 1	2.578
	CRR073307	Third green 2	1.863
	CRR073308	Third green 3	3.209
	CRR073309	Second white 1	4.714
	CRR073310	Second white 2	5.166
	CRR073311	Second white 3	6.336
	CRR073312	Silver flowering 1	4.449
	CRR073313	Silver flowering 2	4.641
	CRR073314	Silver flowering 3	4.289
	CRR073315	Gold flowering 1	6.601
	CRR073316	Gold flowering 2	9.519
	CRR073317	Gold flowering 3	6.386
	CRR073318	Tawny withering 1	7.050
	CRR073319	Tawny withering 2	6.626
	CRR073320	Tawny withering 3	5.726