Detail information of GWHGAAZE031873


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP34864.17.77909E-93hypothetical protein JCGZ_09152 [Jatropha curcas]
trEMBLtr|A0A067KSP7|A0A067KSP7_JATCU3E-93Uncharacterized protein {ECO:0000313|EMBL:KDP34864.1}
TAIR10AT5G44500.23E-52Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6629415366294935-
GWHAAZE00000009mRNA6629415366294935-
GWHAAZE00000009exon6629445066294935-
GWHAAZE00000009exon6629415366294419-
GWHAAZE00000009CDS6629445066294935-
GWHAAZE00000009CDS6629415366294419-
Transcript Sequence

Network for GWHGAAZE031873

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.23LSM9821.70E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11086SNRPB, SMB Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf77.315
SRR3591706second leaf45.575
SRR3591707mature leaf27.053
SRR3591708Shoot apex109.934
SRR3591709Stem47.311
SRR3591710White floral bud47.165
SRR3591711White flower44.887
SRR3591712Green floral bud74.714
SRR3591713Yellow flower33.946
SRP173429 SRR8316895Juvenile bud stage 48.205
SRR8316896Juvenile bud stage 58.406
SRR8316897Juvenile bud stage 24.205
SRR8316894Third green stage 17.626
SRR8316900Third green stage 63.018
SRR8316901Third green stage 61.855
SRR8316898Complete white stage 14.102
SRR8316899Complete white stage 79.078
SRR8316903Complete white stage 19.687
SRR8316902Silver flowering stage17.193
SRR8316904Silver flowering stage16.829
SRR8316905Silver flowering stage6.572
SRR8316906Gold flowering stage 31.140
SRR8316907Gold flowering stage 33.165
SRR8316908Gold flowering stage 33.026
SRP132670SRR6706286Control78.857
SRR6706287Light intensity 50%80.681
SRR6706288Light intensity 20%78.706
CNP0000432CNS0095592Slightly white alabastrum(diploid) 189.509
CNS0095593Slightly white alabastrum(diploid) 2106.073
CNS0095594Slightly white alabastrum(diploid) 380.239
CNS0095595Whole white alabastrum(diploid) 263.486
CNS0095596Whole white alabastrum(diploid) 364.933
CNS0095597Whole white alabastrum(diploid) 452.837
CNS0095598Silvery flower (diploied) 160.577
CNS0095599Silvery flower (diploied) 267.590
CNS0095600Silvery flower (diploied) 361.311
CNS0095601Golden flower (diploid) 162.934
CNS0095602Golden flower (diploid) 263.848
CNS0095603Golden flower (diploid) 360.809
CNS0095604Slightly white alabastrum(tetraploid) 189.186
CNS0095605Slightly white alabastrum(tetraploid) 293.944
CNS0095606Slightly white alabastrum(tetraploid) 3120.431
CNS0095607Whole white alabastrum(tetraploid) 158.054
CNS0095608Whole white alabastrum(tetraploid) 243.626
CNS0095609Whole white alabastrum(tetraploid) 377.515
CNS0095610Silvery flower (tetraploid) 151.092
CNS0095611Silvery flower (tetraploid) 267.056
CNS0095612Silvery flower (tetraploid) 349.060
CNS0095613Golden flower (tetraploid) 138.839
CNS0095614Golden flower (tetraploid) 244.808
CNS0095615Golden flower (tetraploid) 356.488
CRA001975CRR073297Stem 162.869
CRR073298Stem 265.326
CRR073299Stem 3104.111
CRR073300Leaf 162.640
CRR073301Leaf 270.337
CRR073302Leaf 363.933
CRR073303Juvenile bud 176.252
CRR073304Juvenile bud 263.164
CRR073305Juvenile bud 3107.889
CRR073306Third green 115.351
CRR073307Third green 216.261
CRR073308Third green 317.055
CRR073309Second white 126.939
CRR073310Second white 219.071
CRR073311Second white 313.141
CRR073312Silver flowering 118.624
CRR073313Silver flowering 233.963
CRR073314Silver flowering 315.055
CRR073315Gold flowering 150.482
CRR073316Gold flowering 256.974
CRR073317Gold flowering 362.586
CRR073318Tawny withering 178.959
CRR073319Tawny withering 274.396
CRR073320Tawny withering 392.395