Gene detail

Detail information of GWHGAAZE031871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006347748.1	2.12569E-96	PREDICTED: light-inducible protein CPRF2-like [Solanum tuberosum]
Swissprot	tr\|Q99090\|CPRF2_PETCR	4E-93	Light-inducible protein CPRF2
trEMBL	tr\|M1BPR9\|M1BPR9_SOLTU	8E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400050096}
TAIR10	AT5G28770.3	3E-31	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	66220257	66232448	-
GWHAAZE00000009	mRNA	66220257	66232448	-
GWHAAZE00000009	exon	66232441	66232448	-
GWHAAZE00000009	exon	66229033	66229387	-
GWHAAZE00000009	exon	66225942	66226038	-
GWHAAZE00000009	exon	66224342	66224561	-
GWHAAZE00000009	exon	66220602	66220662	-
GWHAAZE00000009	exon	66220257	66220520	-
GWHAAZE00000009	CDS	66232441	66232448	-
GWHAAZE00000009	CDS	66229033	66229387	-
GWHAAZE00000009	CDS	66225942	66226038	-
GWHAAZE00000009	CDS	66224342	66224561	-
GWHAAZE00000009	CDS	66220602	66220662	-
GWHAAZE00000009	CDS	66220257	66220520	-

Transcript Sequence
>GWHTAAZE031909 ATGTGCAGGGTGTTTTCAGTGGATGACATTTCCGACCAATTCTGGTCACAGCCGCCGCCGCCGGCGGTTCATCTATCATCTCAATCGAATAATAGGGAAGAACAAAATAAGTCATCATCATTGATGAATCGGAGTTCTTCTGAGTGGGCGTTCCAGAGATTTCTCCAGGAAGCCTCCGCATCCGATCCTAACCCTCCTCCCGCTTCCAAGAACGATGTCGTCGTCGAGGTCAAAGATCACGATCCTCCTCCGCCTCCGCCACAGTCGAGTGGCCCCCCCAATGTTCCGATAGATTCGGAGGAGTACCAGGCTTTTCTCAAGAGTCGTCTCAATTTGGCTTGTGCTGCCGTTGCTTTGACCCGGGCGTCTTGTGTAAAACCTTCAGATACTGCTACGCTGCCTGACAATGGATCAGAGGCTTCTAATGCTTCACAATTGGGATCTCAAGTTCCCCCTAAAGGATCTTCAGGGTTCGATCCTTCCAAAGGACAAAGTGATAAGGATGGTAGTGCGGCCCCACTCGGAATTCCTTCCTTGCCTTCATTGCAAAAGAAATCTCCGGTTCAGGTTAAGTCGACAACAAGTGGTTCATCAAGGGACCAGTCAGACGATGATGAACTAGACTTGGATACTGAAACTACTCAGAATATGGACCCTGCCGATGTAAAACGTGTAAGAAGAGAATCTGCTAGACGCTCACGAAGAAGAAAACAGGCCCATTTAACTGAGCTTGAGACACAGGTATCCCAATTAAGAGTTGAGAACTCTACTCTATTGAAACGACTCACCGATGTAACCCAGAAGTACAGTGAAGCAGCTGTTGACAACAGAGTTCTGAAAGCTGATGTTGAAACCTTGAGGGCAAAGGTAAGTGGTTCATTGAGGTTTTTTTTTTTTGTTGAGTGCGCTACCCATCTGAGCAAAGGTTTTTCTGATTCGAAGTTGAGTGCGGAAACCCGGAAAATTAAGGTTTACCCATTTTCTCTGACCCAGAAGAGAAACTAA

Network for GWHGAAZE031871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	227	270	2.80E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.319
	SRR3591706	second leaf	36.725
	SRR3591707	mature leaf	39.724
	SRR3591708	Shoot apex	39.067
	SRR3591709	Stem	46.482
	SRR3591710	White floral bud	40.650
	SRR3591711	White flower	54.664
	SRR3591712	Green floral bud	31.659
	SRR3591713	Yellow flower	58.069
SRP173429	SRR8316895	Juvenile bud stage	20.109
	SRR8316896	Juvenile bud stage	25.145
	SRR8316897	Juvenile bud stage	16.990
	SRR8316894	Third green stage	10.623
	SRR8316900	Third green stage	27.318
	SRR8316901	Third green stage	30.782
	SRR8316898	Complete white stage	18.455
	SRR8316899	Complete white stage	48.071
	SRR8316903	Complete white stage	31.549
	SRR8316902	Silver flowering stage	20.469
	SRR8316904	Silver flowering stage	29.298
	SRR8316905	Silver flowering stage	14.899
	SRR8316906	Gold flowering stage	53.702
	SRR8316907	Gold flowering stage	57.330
	SRR8316908	Gold flowering stage	58.772
SRP132670	SRR6706286	Control	38.473
	SRR6706287	Light intensity 50%	36.230
	SRR6706288	Light intensity 20%	38.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.144
	CNS0095593	Slightly white alabastrum(diploid) 2	22.406
	CNS0095594	Slightly white alabastrum(diploid) 3	16.383
	CNS0095595	Whole white alabastrum(diploid) 2	18.108
	CNS0095596	Whole white alabastrum(diploid) 3	14.195
	CNS0095597	Whole white alabastrum(diploid) 4	18.333
	CNS0095598	Silvery flower (diploied) 1	34.597
	CNS0095599	Silvery flower (diploied) 2	28.183
	CNS0095600	Silvery flower (diploied) 3	48.801
	CNS0095601	Golden flower (diploid) 1	32.666
	CNS0095602	Golden flower (diploid) 2	60.458
	CNS0095603	Golden flower (diploid) 3	54.311
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.735
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.631
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.762
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.174
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.955
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.796
	CNS0095610	Silvery flower (tetraploid) 1	59.933
	CNS0095611	Silvery flower (tetraploid) 2	52.634
	CNS0095612	Silvery flower (tetraploid) 3	58.932
	CNS0095613	Golden flower (tetraploid) 1	40.461
	CNS0095614	Golden flower (tetraploid) 2	64.603
	CNS0095615	Golden flower (tetraploid) 3	75.550
CRA001975	CRR073297	Stem 1	50.364
	CRR073298	Stem 2	47.702
	CRR073299	Stem 3	49.960
	CRR073300	Leaf 1	48.320
	CRR073301	Leaf 2	42.234
	CRR073302	Leaf 3	39.604
	CRR073303	Juvenile bud 1	39.760
	CRR073304	Juvenile bud 2	33.293
	CRR073305	Juvenile bud 3	50.133
	CRR073306	Third green 1	39.045
	CRR073307	Third green 2	38.674
	CRR073308	Third green 3	34.828
	CRR073309	Second white 1	29.322
	CRR073310	Second white 2	40.105
	CRR073311	Second white 3	36.912
	CRR073312	Silver flowering 1	45.812
	CRR073313	Silver flowering 2	41.696
	CRR073314	Silver flowering 3	52.423
	CRR073315	Gold flowering 1	50.204
	CRR073316	Gold flowering 2	67.215
	CRR073317	Gold flowering 3	43.952
	CRR073318	Tawny withering 1	40.841
	CRR073319	Tawny withering 2	37.881
	CRR073320	Tawny withering 3	37.973