Gene detail

Detail information of GWHGAAZE031839

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091852.1	0	PREDICTED: E3 ubiquitin-protein ligase KEG [Sesamum indicum]
COG	YP_001958455.1	2E-24	hypothetical protein Aasi_1435
Swissprot	tr\|Q9FY48\|KEG_ARATH	0	E3 ubiquitin-protein ligase KEG
trEMBL	tr\|D7TX82\|D7TX82_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI35107.3}
TAIR10	AT5G13530.1	0	protein kinases;ubiquitin-protein ligases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65688364	65708030	+
GWHAAZE00000009	mRNA	65688364	65708030	+
GWHAAZE00000009	exon	65688364	65688428	+
GWHAAZE00000009	exon	65688742	65689104	+
GWHAAZE00000009	exon	65689721	65689951	+
GWHAAZE00000009	exon	65690425	65690550	+
GWHAAZE00000009	exon	65690667	65691003	+
GWHAAZE00000009	exon	65691420	65691577	+
GWHAAZE00000009	exon	65694615	65694772	+
GWHAAZE00000009	exon	65695423	65695544	+
GWHAAZE00000009	exon	65695651	65695785	+
GWHAAZE00000009	exon	65703147	65703257	+
GWHAAZE00000009	exon	65703476	65703552	+
GWHAAZE00000009	exon	65707769	65708030	+
GWHAAZE00000009	CDS	65688364	65688428	+
GWHAAZE00000009	CDS	65688742	65689104	+
GWHAAZE00000009	CDS	65689721	65689951	+
GWHAAZE00000009	CDS	65690425	65690550	+
GWHAAZE00000009	CDS	65690667	65691003	+
GWHAAZE00000009	CDS	65691420	65691577	+
GWHAAZE00000009	CDS	65694615	65694772	+
GWHAAZE00000009	CDS	65695423	65695544	+
GWHAAZE00000009	CDS	65695651	65695785	+
GWHAAZE00000009	CDS	65703147	65703257	+
GWHAAZE00000009	CDS	65703476	65703552	+
GWHAAZE00000009	CDS	65707769	65708030	+

Transcript Sequence
>GWHTAAZE031877 ATGGTAGGAGGCAAATCTAAGAATCATCAACCTTACCCTTTCCCCAAGCTTGCACGCCTGCGGAAATATGGAGCAGATATTGCCCGTGGAGTGGCTGAACTCCATGCAGCGGGTGTTGTTTGTATGAACCTAAAACCATCCAATCTTCTTTTGGATGACAATGGTCATGCTGTGGTTTCTGATTATGGACTTCCAGCAATTCTAAAGAAATCAGATTGCCGAAAAGCTCGGTCAGAGTGTGATTCCTCAAGGATTCATTCATGCATGGAGTGTACAATGCTTAGCCCAAACTACACTGCTCCCGAGGCATGGGAGCCTGTAAAGAAGACATTGAATCTCTTTTGGGATGATGCCATTGGCATATCCGCGGAGTCAGATGCATGGAGCTTTGGTTGTACATTGGTTGAAATGTGCACTGGTTCTATCCCTTGGACTGGCTTTAGTGCCGAGGAAATCTATCGCTTTGTTGTAAAGGCAAAAAGACAACCTCCACAATATGCTAGTGTAGTTGGTGTTGGAATACCCAGGGAATTGTGGAAGATGATTGGCGAGTGCCTGCAATTCAAGGCATCCAGAAGACCAACTTTTAATGCAATGCTAGCAATATTCCTTAGACACTTGCAAGAGATACCTCGCAGCCCTCCTGCAAGCCCCGATAAAGACTTGGCAATTTGCTCTGGAACAAATGGTGTGGTACCAGCTTCTTCATCAAATATAGAAGTTATTCCTGATAATCCAAAGCTTCTACACAAGCATGTCTCGGAAGGCAATTTGCATGGTGTTAATGAGCTGCTTGCGAGGGCTGCATCAAGAAATAGTGGCGACTCACTATACTCTCTATTAGAAGCACAGAATGCTGACGGTCAAACTGCCCTTCACCTGGCTTGCAGACGGGGTAGCGCTGAACTTGTTGAGGCCATTTTGGAGTTCAAAGAGGCAAATGTGGATGTCTTAGACAAAGACGGGGACCCTCCACTTGTATTTGCTTTGGCAGCTGGATCACCAGAATGTGTTCGTGCCCTAATTAGAAGTCATGCTAATGTCAGATCTAGATTGAGGGAAGGGTTTGGTCCCTCTGTTGCTCATGTTTGTGCCTACCATGGTCAGCCAGATTGCATGCGTGAGTTACTATTGGCTGGGGCTGATCCAAACGCAGTAGATGATGAAGGTGAATCTGTGCTTCACAGAGCTGTAGCTAAAAAATATACGGACTGTGCTATTGTTATATTGGAAAACAGAGGGTGTAAATCAATGGGGATCCTGAATACAAAAAATTTGACACCTCTGCACTTATGCATAATGACATGGAATGCAGCTGTTGTCAAAAGATGGGCAGAACTTGCATCCACTGAAGAAATTGCTGATGCCATTGATGTACCGAGTAGTGCTGGCACTGCATTGTGTATGGCAGCTTCCCTGAAGAGAGATCATGAAGCCGAGGGGAGAGAGCTGGTACGCATACTGCTTGCTGCTGGAGCAGATGCTACTGCCCAAGACGCCCAACATGGCCGAACAGCTTTGCATACAGCTGCTATGGCTGATGATGTCGAGTTAGTCAAGATTATTCTTGATGCTGGAGTTGATGTGAATATAAGGAATGTGCACAATACTATTCCTCTTCATGTAGCTTTGGCAAGAGGAGCAAAATCATGTGTTGGGTTGCTTCTATCTGCCGGGGCAAATTGCAATTTGCAGGACGATGAGGGTGACAATGCTTTTCACATAGCTGCCGATTCAGCAAAGATGATACGTGAAAATCTTGAATGGATCATTGTTATGCTTAGATATCCAGAGGTTGCTGTGGAGGCACTTCCCCGGGAATGGATTTCAGAGGATCTGATGGAAGCACTCGCGAATAAGGATGTTCATTTGTTTCCCACAATATATCAAGTGGGAGACTGGGTGAAGTTTAAAAGAAGTGTTACAACTCCGACTTATGGGTGGCAAGGTGCAAAACAGAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAAGGACCATCTGATTGTGTCATTTTGTTCCGGGGAAGCTCGTGTATTGGCAAATGAAGTTATAAAAGTGATTCCGTTAGACAGGGGGCAACATGTGCAACTCAAACCAGATGTGAAGGAGCCGAGGTTTGATCCAATATTTTTGCTAACATAG

Network for GWHGAAZE031839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	19	200	4.50E-20
PF12796.8	Ank_2	249	348	5.10E-12
PF13637.7	Ank_4	359	408	6.60E-08
PF12796.8	Ank_2	481	566	4.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.446
	SRR3591706	second leaf	11.358
	SRR3591707	mature leaf	11.711
	SRR3591708	Shoot apex	11.967
	SRR3591709	Stem	16.183
	SRR3591710	White floral bud	25.628
	SRR3591711	White flower	23.575
	SRR3591712	Green floral bud	15.465
	SRR3591713	Yellow flower	17.346
SRP173429	SRR8316895	Juvenile bud stage	8.744
	SRR8316896	Juvenile bud stage	11.312
	SRR8316897	Juvenile bud stage	5.093
	SRR8316894	Third green stage	6.909
	SRR8316900	Third green stage	13.708
	SRR8316901	Third green stage	12.609
	SRR8316898	Complete white stage	5.329
	SRR8316899	Complete white stage	13.689
	SRR8316903	Complete white stage	14.155
	SRR8316902	Silver flowering stage	9.672
	SRR8316904	Silver flowering stage	17.509
	SRR8316905	Silver flowering stage	7.741
	SRR8316906	Gold flowering stage	25.319
	SRR8316907	Gold flowering stage	26.799
	SRR8316908	Gold flowering stage	22.793
SRP132670	SRR6706286	Control	22.531
	SRR6706287	Light intensity 50%	23.426
	SRR6706288	Light intensity 20%	24.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.283
	CNS0095593	Slightly white alabastrum(diploid) 2	2.430
	CNS0095594	Slightly white alabastrum(diploid) 3	4.155
	CNS0095595	Whole white alabastrum(diploid) 2	4.339
	CNS0095596	Whole white alabastrum(diploid) 3	3.710
	CNS0095597	Whole white alabastrum(diploid) 4	5.114
	CNS0095598	Silvery flower (diploied) 1	8.896
	CNS0095599	Silvery flower (diploied) 2	6.663
	CNS0095600	Silvery flower (diploied) 3	34.868
	CNS0095601	Golden flower (diploid) 1	8.334
	CNS0095602	Golden flower (diploid) 2	31.957
	CNS0095603	Golden flower (diploid) 3	31.328
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.263
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.481
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.996
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.380
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.791
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.606
	CNS0095610	Silvery flower (tetraploid) 1	30.310
	CNS0095611	Silvery flower (tetraploid) 2	33.586
	CNS0095612	Silvery flower (tetraploid) 3	36.971
	CNS0095613	Golden flower (tetraploid) 1	11.045
	CNS0095614	Golden flower (tetraploid) 2	26.699
	CNS0095615	Golden flower (tetraploid) 3	34.979
CRA001975	CRR073297	Stem 1	23.631
	CRR073298	Stem 2	19.681
	CRR073299	Stem 3	17.347
	CRR073300	Leaf 1	23.478
	CRR073301	Leaf 2	18.333
	CRR073302	Leaf 3	13.586
	CRR073303	Juvenile bud 1	16.367
	CRR073304	Juvenile bud 2	14.037
	CRR073305	Juvenile bud 3	23.963
	CRR073306	Third green 1	23.561
	CRR073307	Third green 2	11.234
	CRR073308	Third green 3	20.261
	CRR073309	Second white 1	18.582
	CRR073310	Second white 2	25.594
	CRR073311	Second white 3	38.102
	CRR073312	Silver flowering 1	24.674
	CRR073313	Silver flowering 2	22.120
	CRR073314	Silver flowering 3	19.553
	CRR073315	Gold flowering 1	5.746
	CRR073316	Gold flowering 2	12.593
	CRR073317	Gold flowering 3	9.175
	CRR073318	Tawny withering 1	12.172
	CRR073319	Tawny withering 2	5.842
	CRR073320	Tawny withering 3	10.457