Gene detail

Detail information of GWHGAAZE031812

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002525575.1	0	serine-threonine protein kinase, plant-type, putative [Ricinus communis]
COG	YP_002524068.1	2E-27	serine/threonine-protein kinase PksC
Swissprot	tr\|Q9ZUE0\|PEK12_ARATH	8E-80	Proline-rich receptor-like protein kinase PERK12
trEMBL	tr\|B9SHV6\|B9SHV6_RICCO	0	Serine-threonine protein kinase, plant-type, putative {ECO:0000313\|EMBL:EEF36834.1}
TAIR10	AT5G56790.1	1E-77	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65282900	65289857	+
GWHAAZE00000009	mRNA	65282900	65289857	+
GWHAAZE00000009	exon	65282900	65283092	+
GWHAAZE00000009	exon	65283593	65283735	+
GWHAAZE00000009	exon	65284422	65284519	+
GWHAAZE00000009	exon	65285491	65285680	+
GWHAAZE00000009	exon	65287462	65288176	+
GWHAAZE00000009	exon	65288570	65288718	+
GWHAAZE00000009	exon	65288811	65289032	+
GWHAAZE00000009	exon	65289534	65289683	+
GWHAAZE00000009	exon	65289834	65289857	+
GWHAAZE00000009	CDS	65282900	65283092	+
GWHAAZE00000009	CDS	65283593	65283735	+
GWHAAZE00000009	CDS	65284422	65284519	+
GWHAAZE00000009	CDS	65285491	65285680	+
GWHAAZE00000009	CDS	65287462	65288176	+
GWHAAZE00000009	CDS	65288570	65288718	+
GWHAAZE00000009	CDS	65288811	65289032	+
GWHAAZE00000009	CDS	65289534	65289683	+
GWHAAZE00000009	CDS	65289834	65289857	+

Transcript Sequence
>GWHTAAZE031850 ATGTCAGAGGGAGCAGAGACGAAGGTGGTGGTGGTGATCCATGATGCATCGAGAGACGTAAGTTGGAGTGCAGTGAGAGGGGTCCTCCATTGCTTACAACTTAAGCCTGGAGACGAGCTCATACTCCTCGGAGTTCTTCACCAGGTTAATAACCCTAGTACGTTATCATCTTTCATGGGAGCTAGAAAAAAGTTGGGGTACAAAAGCAAAGTGGATTCGAGTTCAATTGTGGGATCAAACTCGAGAATTGTGGAAGAGGAAGTTGCGAGGAAGTTGGAACAGTACCAGAAGAGTGGGGAGAGGAAGCAACTCAGTAAGCAGTGTCAAATGGAAAAGATAAAGTTCCGGATTTTGATGCATGTTGGGCCTTCTCCAAAGGTGGTTGCTTTAGAAGCTGCCATAAGTTTAACGGCGACTTGGGTCATACTTGACAGGCAGATGAAGAAAGACAGGAAATACTTCATGGAGAATCTATCATGCGGAGTATCGAGGATGAAACGCGACAATACTATTGAAGAGCTGAGAGGGCCAAAAGGAACAGAGACCACAAAATTGGCTCAAGAGAAAACCACTACTAGTACTGGACCTTATGTATCCTATGGTGAAATGATACCTGGGGAAAAGACTATCTATGGCAAGGAACAAGGCAGTGAGGGTGGTGGACTGCCCCCATGGGACAACTATCACAGATCCGGTTCACTATCTTTTTCATCATCTAGTGAGCAGAATTATTCGTCGACACTGTCAACTTCAAGCCTTGGGAACACCGAAGCCTCGATTTTCAGTTTCAAGGAAACAAAAACCTCTCCTCCAAACTTCCAGACCGAAGAAAACACCACCACCACCACTGAACAAGAAACCGCTGGAGAACATTCCCCGTTCTCCTATCCTGAGAGCATAGAGCGAACTCAAACCGAACCGTCAGACATAGGCAGCCCAAATGAGCAACAAAAGCAAAGCATTAGTGATGGAGAAGAATTCGAGAATTCCATTTGCTCAGTTTGCAAGAACAAGAGGCCTAAGGTTGGATGGAAAAGGGATTTCACTTATACAGAGCTTCATGAAGCCACAGAGGGGTTTGCTCCAAAGAATTTTTTGTCTGAAGGAGGATTTGGGTGCGTATATAAAGGAGTGCTTAAAAAAGGGCTTAAGGTTGCTGTTAAGCAACATAAGGATGCCAGTTTTCAAGGAGAGAAAGAGTTTAAGTCAGAAGTTAGTGTATTAAGCAGGGCAAGGCATCAGAATTTGGTGATGCTGTTGGGTTCATGTTCGGAAGGGAGCCATAGGCTGCTTGTTTATGAGTATGTCTGCAATGGTTCTTTGGACCAACACTTATCAAAATACACGCGAAGACCGCTCAATTGGGACAAGAGGATAAAAATAGCAATGGGAGCCGCCAAAGGTTTAGAATATCTCCACACAAACAACATCATCCACAGAGATATGAGACCTAACAACATCCTTGTAACCCATGACCATGAGTCACTGCTAGGAGATTTCGGTCTTGCAAGAGCTCAATATGACGATGTAGAACACTCCTCGGAAACAAGCTTGGTTGGGACCCTCGGGTACGTGGCACCAGAATATGCAGAATGTGGGAAAGTGTCAACCAAGACAGATGTGTATTCCTTTGGGGTGGTTCTATTACAGCTGATCACTGGACTGAAGACAACAGACAAGAAATTTGGAGGCAAAAGTCTAGTGGGATGGGCAAGACCGCTTCTGAAAGAAAAGAACTACGGAGATTTAATTGACCAAAGGATCGAAGAGGCCCACGACGTTCACCAACTCTTTTGGATGGTTCGAGTAGCAGAAAAATGTCTCAGCAAGGATCCTACCAAGAGATATAGCATGGAAAGGACAGACAAAGCAACGTCAAAGTAA

Network for GWHGAAZE031812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	365	620	1.70E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.071
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.260
	SRR3591710	White floral bud	3.497
	SRR3591711	White flower	0.117
	SRR3591712	Green floral bud	0.174
	SRR3591713	Yellow flower	0.070
SRP173429	SRR8316895	Juvenile bud stage	0.350
	SRR8316896	Juvenile bud stage	0.414
	SRR8316897	Juvenile bud stage	0.136
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.118
	SRR8316901	Third green stage	0.020
	SRR8316898	Complete white stage	0.141
	SRR8316899	Complete white stage	0.332
	SRR8316903	Complete white stage	0.975
	SRR8316902	Silver flowering stage	0.019
	SRR8316904	Silver flowering stage	0.071
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.017
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.196
	SRR6706287	Light intensity 50%	0.055
	SRR6706288	Light intensity 20%	0.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.141
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.309
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.136
	CNS0095598	Silvery flower (diploied) 1	0.111
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.017
	CNS0095601	Golden flower (diploid) 1	0.055
	CNS0095602	Golden flower (diploid) 2	0.107
	CNS0095603	Golden flower (diploid) 3	0.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.053
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.194
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.047
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.005
	CNS0095611	Silvery flower (tetraploid) 2	0.015
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.024
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.286
	CRR073298	Stem 2	0.069
	CRR073299	Stem 3	0.145
	CRR073300	Leaf 1	0.147
	CRR073301	Leaf 2	0.200
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.043
	CRR073304	Juvenile bud 2	0.079
	CRR073305	Juvenile bud 3	0.630
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.080
	CRR073308	Third green 3	0.429
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.092
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.064