Gene detail

Detail information of GWHGAAZE031803

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251876.1	1.56713E-95	PREDICTED: uncharacterized protein LOC104593630 [Nelumbo nucifera]
trEMBL	tr\|B9GLU7\|B9GLU7_POPTR	2E-92	Uncharacterized protein {ECO:0000313\|EMBL:EEE82520.2}
TAIR10	AT5G07900.1	9E-41	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	65077546	65078778	-
GWHAAZE00000009	mRNA	65077546	65078778	-
GWHAAZE00000009	exon	65077546	65078537	-
GWHAAZE00000009	exon	65078766	65078778	-
GWHAAZE00000009	CDS	65078766	65078778	-
GWHAAZE00000009	CDS	65077546	65078537	-

Transcript Sequence
>GWHTAAZE031841 ATGGCCAATCTAGATGCCCTTTCTGCTTCCAAAAAGTTCCAATTAAAGGAAAACAAGTCCCATCAACACCAATATGTCTTGGACCTTTTGCGATCCTTTCAATTCTCCGATACCCACATCAAGAAACTCCTCATTAAATACCCCAGGATCCTCCAATCTAAGGTACACGGTAATCTTGAACCTAAATTACAGTTCCTCGCATATTATGGCTTTGTGGGTCCTCTTCTCCCCGAGTTAATCGTCGCCAATCCGCATATTTTGCGTAAAAGCTTGAGTGACTTCATAAAACCAACATTTGAATTCCTAGGGAAGTACATACGGACGCCTGACAAAGTTGTACTTGCTGCCAAACGCTCGCCAAGGCTTATCACATCTAATTTGAACCGAGATTTGCAACCAAATGTTGACTTCTTGTTAAGTGAAGGGGTGACCCCTACCACAATAGAAAAACACATTGTTAGGCAGCCGAGAACTCTGATGATGAAGCTTCATAAAATCGTGAAGGCAGTTGAAACTTTCAAAGATATGGGTCTCAAGCCTAGTGCTCCTATGTTTCTAGAAGCTATTCGAGTAATGCTCTCATTGAGCCATTCAACGTGGGAAAGGAAAATGCAAATGTTTAAGAGTTTCGGGTGGTCTAAGGAAGAGATTATATATGCACTTCTGCGCAATCCAGTGGTTTTGTCTTCTTCTGAGGAGAAGATCAGGAGTTTAATGGACTTTTATTTGAACACCGTGAATTTGACTCCTGCTGTTATTTCAAGTTATCCCATATTACTTAACTTCCGACTAAGTACAAGAATTCGTCCAAGGTATAATGTTATGAAAGTGTTGAAGTCCAAAGAATTGCTTAAGGAGGACGGTAAGTATCATTGGCTATTCAATATAAGTGAGAAAAAATTCGTGACAGGTATTGTGGATAAGCATTTGGATAAAGTTCCAAATTTGATGAAGCTATATCGTGGTACTATCACTGTTGATAAGATTGATATTCAGCCACACTGA

Network for GWHGAAZE031803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	27	143	1.30E-13
PF02536.15	mTERF	108	166	2.20E-05
PF02536.15	mTERF	126	301	1.40E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.379
	SRR3591706	second leaf	3.460
	SRR3591707	mature leaf	2.010
	SRR3591708	Shoot apex	8.571
	SRR3591709	Stem	3.926
	SRR3591710	White floral bud	4.818
	SRR3591711	White flower	6.639
	SRR3591712	Green floral bud	7.301
	SRR3591713	Yellow flower	2.670
SRP173429	SRR8316895	Juvenile bud stage	4.455
	SRR8316896	Juvenile bud stage	5.856
	SRR8316897	Juvenile bud stage	2.293
	SRR8316894	Third green stage	1.946
	SRR8316900	Third green stage	9.492
	SRR8316901	Third green stage	8.795
	SRR8316898	Complete white stage	2.977
	SRR8316899	Complete white stage	12.453
	SRR8316903	Complete white stage	5.527
	SRR8316902	Silver flowering stage	3.015
	SRR8316904	Silver flowering stage	5.043
	SRR8316905	Silver flowering stage	1.855
	SRR8316906	Gold flowering stage	5.890
	SRR8316907	Gold flowering stage	6.369
	SRR8316908	Gold flowering stage	3.172
SRP132670	SRR6706286	Control	3.919
	SRR6706287	Light intensity 50%	4.050
	SRR6706288	Light intensity 20%	4.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.010
	CNS0095593	Slightly white alabastrum(diploid) 2	4.592
	CNS0095594	Slightly white alabastrum(diploid) 3	4.323
	CNS0095595	Whole white alabastrum(diploid) 2	3.697
	CNS0095596	Whole white alabastrum(diploid) 3	6.122
	CNS0095597	Whole white alabastrum(diploid) 4	3.320
	CNS0095598	Silvery flower (diploied) 1	8.827
	CNS0095599	Silvery flower (diploied) 2	5.790
	CNS0095600	Silvery flower (diploied) 3	7.140
	CNS0095601	Golden flower (diploid) 1	5.030
	CNS0095602	Golden flower (diploid) 2	5.937
	CNS0095603	Golden flower (diploid) 3	5.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.797
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.238
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.913
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.907
	CNS0095610	Silvery flower (tetraploid) 1	4.890
	CNS0095611	Silvery flower (tetraploid) 2	4.549
	CNS0095612	Silvery flower (tetraploid) 3	3.810
	CNS0095613	Golden flower (tetraploid) 1	3.011
	CNS0095614	Golden flower (tetraploid) 2	3.097
	CNS0095615	Golden flower (tetraploid) 3	3.154
CRA001975	CRR073297	Stem 1	4.567
	CRR073298	Stem 2	4.655
	CRR073299	Stem 3	4.503
	CRR073300	Leaf 1	5.308
	CRR073301	Leaf 2	4.328
	CRR073302	Leaf 3	4.056
	CRR073303	Juvenile bud 1	3.293
	CRR073304	Juvenile bud 2	3.250
	CRR073305	Juvenile bud 3	5.583
	CRR073306	Third green 1	0.187
	CRR073307	Third green 2	1.324
	CRR073308	Third green 3	0.125
	CRR073309	Second white 1	0.652
	CRR073310	Second white 2	0.248
	CRR073311	Second white 3	0.713
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.106
	CRR073314	Silver flowering 3	0.756
	CRR073315	Gold flowering 1	4.133
	CRR073316	Gold flowering 2	1.742
	CRR073317	Gold flowering 3	2.221
	CRR073318	Tawny withering 1	2.965
	CRR073319	Tawny withering 2	2.766
	CRR073320	Tawny withering 3	3.419