Detail information of GWHGAAZE031795


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009765899.10PREDICTED: protein ELC-like [Nicotiana sylvestris]
Swissprottr|Q9LHG8|ELC_ARATH1E-165Protein ELC
trEMBLtr|F6GWC1|F6GWC1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44284.1}
TAIR10AT3G12400.12E-66Ubiquitin-conjugating enzyme/RWD-like protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6500290865004167+
GWHAAZE00000009mRNA6500290865004167+
GWHAAZE00000009exon6500290865004167+
GWHAAZE00000009CDS6500290865004167+
Transcript Sequence

Network for GWHGAAZE031795

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05743.14UEV441646.10E-37
PF09454.11Vps23_core3343975.30E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12183TSG101, STP22, VPS23 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0006464biological_processcellular protein modification process
GO:0015031biological_processprotein transport

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE031795.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550556065Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.967
SRR3591706second leaf16.809
SRR3591707mature leaf19.650
SRR3591708Shoot apex21.103
SRR3591709Stem36.960
SRR3591710White floral bud43.450
SRR3591711White flower47.609
SRR3591712Green floral bud36.815
SRR3591713Yellow flower45.153
SRP173429 SRR8316895Juvenile bud stage 25.802
SRR8316896Juvenile bud stage 31.682
SRR8316897Juvenile bud stage 18.331
SRR8316894Third green stage 11.790
SRR8316900Third green stage 29.212
SRR8316901Third green stage 32.781
SRR8316898Complete white stage 15.148
SRR8316899Complete white stage 48.531
SRR8316903Complete white stage 31.897
SRR8316902Silver flowering stage22.537
SRR8316904Silver flowering stage24.876
SRR8316905Silver flowering stage14.443
SRR8316906Gold flowering stage 46.483
SRR8316907Gold flowering stage 44.019
SRR8316908Gold flowering stage 48.163
SRP132670SRR6706286Control38.930
SRR6706287Light intensity 50%37.653
SRR6706288Light intensity 20%34.669
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.202
CNS0095593Slightly white alabastrum(diploid) 222.386
CNS0095594Slightly white alabastrum(diploid) 322.553
CNS0095595Whole white alabastrum(diploid) 222.671
CNS0095596Whole white alabastrum(diploid) 317.616
CNS0095597Whole white alabastrum(diploid) 421.998
CNS0095598Silvery flower (diploied) 129.400
CNS0095599Silvery flower (diploied) 230.420
CNS0095600Silvery flower (diploied) 346.929
CNS0095601Golden flower (diploid) 129.589
CNS0095602Golden flower (diploid) 247.073
CNS0095603Golden flower (diploid) 351.503
CNS0095604Slightly white alabastrum(tetraploid) 119.486
CNS0095605Slightly white alabastrum(tetraploid) 217.588
CNS0095606Slightly white alabastrum(tetraploid) 329.420
CNS0095607Whole white alabastrum(tetraploid) 116.827
CNS0095608Whole white alabastrum(tetraploid) 217.636
CNS0095609Whole white alabastrum(tetraploid) 325.712
CNS0095610Silvery flower (tetraploid) 140.872
CNS0095611Silvery flower (tetraploid) 234.736
CNS0095612Silvery flower (tetraploid) 339.067
CNS0095613Golden flower (tetraploid) 129.500
CNS0095614Golden flower (tetraploid) 235.806
CNS0095615Golden flower (tetraploid) 352.257
CRA001975CRR073297Stem 128.795
CRR073298Stem 231.915
CRR073299Stem 327.998
CRR073300Leaf 136.170
CRR073301Leaf 241.414
CRR073302Leaf 321.984
CRR073303Juvenile bud 126.113
CRR073304Juvenile bud 237.458
CRR073305Juvenile bud 350.340
CRR073306Third green 140.768
CRR073307Third green 231.973
CRR073308Third green 339.865
CRR073309Second white 138.375
CRR073310Second white 233.570
CRR073311Second white 339.520
CRR073312Silver flowering 153.849
CRR073313Silver flowering 259.761
CRR073314Silver flowering 356.035
CRR073315Gold flowering 122.630
CRR073316Gold flowering 239.631
CRR073317Gold flowering 329.029
CRR073318Tawny withering 133.766
CRR073319Tawny withering 230.394
CRR073320Tawny withering 333.038