Detail information of GWHGAAZE031762


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI17738.34.4244E-106unnamed protein product [Vitis vinifera]
Swissprottr|Q9LPR8|SCL3_ARATH9E-80Scarecrow-like protein 3
trEMBLtr|A0A078I6N5|A0A078I6N5_BRANA9E-103BnaA08g02160D protein {ECO:0000313|EMBL:CDY45059.1}
TAIR10AT1G50420.13E-57scarecrow-like 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6458230264583096+
GWHAAZE00000009mRNA6458230264583096+
GWHAAZE00000009exon6458230264582464+
GWHAAZE00000009exon6458263064583096+
GWHAAZE00000009CDS6458230264582464+
GWHAAZE00000009CDS6458263064583096+
Transcript Sequence

Network for GWHGAAZE031762

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS12041.90E-72
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.912
SRR3591706second leaf10.406
SRR3591707mature leaf8.594
SRR3591708Shoot apex8.879
SRR3591709Stem8.174
SRR3591710White floral bud3.997
SRR3591711White flower12.238
SRR3591712Green floral bud4.823
SRR3591713Yellow flower6.502
SRP173429 SRR8316895Juvenile bud stage 4.495
SRR8316896Juvenile bud stage 4.363
SRR8316897Juvenile bud stage 2.779
SRR8316894Third green stage 2.248
SRR8316900Third green stage 4.560
SRR8316901Third green stage 3.714
SRR8316898Complete white stage 1.972
SRR8316899Complete white stage 3.330
SRR8316903Complete white stage 2.271
SRR8316902Silver flowering stage3.345
SRR8316904Silver flowering stage3.294
SRR8316905Silver flowering stage1.179
SRR8316906Gold flowering stage 5.984
SRR8316907Gold flowering stage 5.232
SRR8316908Gold flowering stage 5.855
SRP132670SRR6706286Control1.703
SRR6706287Light intensity 50%1.697
SRR6706288Light intensity 20%1.707
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.269
CNS0095593Slightly white alabastrum(diploid) 21.544
CNS0095594Slightly white alabastrum(diploid) 34.332
CNS0095595Whole white alabastrum(diploid) 22.704
CNS0095596Whole white alabastrum(diploid) 32.486
CNS0095597Whole white alabastrum(diploid) 43.041
CNS0095598Silvery flower (diploied) 17.490
CNS0095599Silvery flower (diploied) 26.370
CNS0095600Silvery flower (diploied) 35.334
CNS0095601Golden flower (diploid) 16.641
CNS0095602Golden flower (diploid) 27.757
CNS0095603Golden flower (diploid) 36.988
CNS0095604Slightly white alabastrum(tetraploid) 15.214
CNS0095605Slightly white alabastrum(tetraploid) 24.566
CNS0095606Slightly white alabastrum(tetraploid) 39.938
CNS0095607Whole white alabastrum(tetraploid) 12.493
CNS0095608Whole white alabastrum(tetraploid) 22.425
CNS0095609Whole white alabastrum(tetraploid) 36.012
CNS0095610Silvery flower (tetraploid) 18.573
CNS0095611Silvery flower (tetraploid) 26.463
CNS0095612Silvery flower (tetraploid) 35.470
CNS0095613Golden flower (tetraploid) 15.105
CNS0095614Golden flower (tetraploid) 28.437
CNS0095615Golden flower (tetraploid) 36.568
CRA001975CRR073297Stem 15.006
CRR073298Stem 23.825
CRR073299Stem 34.060
CRR073300Leaf 14.015
CRR073301Leaf 22.440
CRR073302Leaf 32.478
CRR073303Juvenile bud 13.898
CRR073304Juvenile bud 20.753
CRR073305Juvenile bud 32.945
CRR073306Third green 10.550
CRR073307Third green 21.391
CRR073308Third green 31.233
CRR073309Second white 17.070
CRR073310Second white 23.342
CRR073311Second white 33.884
CRR073312Silver flowering 14.781
CRR073313Silver flowering 22.757
CRR073314Silver flowering 34.626
CRR073315Gold flowering 112.396
CRR073316Gold flowering 211.384
CRR073317Gold flowering 37.843
CRR073318Tawny withering 14.543
CRR073319Tawny withering 24.682
CRR073320Tawny withering 32.827