Gene detail

Detail information of GWHGAAZE031737

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271281.1	0	PREDICTED: serine/threonine-protein kinase-like protein At3g51990 isoform X1 [Vitis vinifera]
COG	YP_001958461.1	1E-18	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SV05\|CCR35_ARATH	9E-136	Serine/threonine-protein kinase-like protein At3g51990 (Precursor)
trEMBL	tr\|F6HHX3\|F6HHX3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51819.1}
TAIR10	AT3G51990.1	1E-103	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64263051	64264559	+
GWHAAZE00000009	mRNA	64263051	64264559	+
GWHAAZE00000009	exon	64263051	64264559	+
GWHAAZE00000009	CDS	64263051	64264559	+

Transcript Sequence
>GWHTAAZE031775 ATGGGTTATCTATCTTGTAAAGCTGAATCATCCATTTCAATCTCCGATTCAACCTCTTCCAAGAAAACCGAATTCAACCCCCAAACCGAGAAACCCATCAAAATCCAACAATTCGATTACAGTGACCTTGAAGCCGCCACCGATGGCTTCTCCGACCAGAAACTCCTCGGCCGTGGAAGCCACGGCCTCGTTTACAAGGCCGTCCTCCGCTCCGGCCGCCAAGTTGCCGTCAAGAAGCCCTCACGCTCCTCCGTGAACAATCCCTCAATCCCACGGGCCGCCGTGAAGAATAACTCACGTGCCGTCGTCTCCTGCCTGTCGCCGGCGCTGGAGAATCCCAACGAGGTGGATAATGAAATTGACATTCTGTCGAAGATCCAGAGCCCTAGGTTTGTGAATTTGGTTGGGTTTACTAACAATTCCAAGGATAGGCTATTGGTGGTTGAGTTTATGAGTAATGGGACACTTTATGAGATTCTTCATTCAAACCCTAGGCCACCCAGCTGGGGGAGGAGAATTAGACTTGCCCTTCAAACTGCAAAAGCAATTGAAACCCTACATTCATCTGTTCCTCCTGTAATTCATAGGGATATAAAGTCTGCTAATGTGTTAATTGACCGTAACTTCAATGCTAGATTAGGTGATTTTGGGCTTGCCTTGAGGTGCCATGTTGATGATTATAGGCTTCTTTCAACTCCCCCTGCAGGTACAATGGGTTATCTCGATCCAGGGTATGTGACACCTGATAATTTGAGTACTAAAACTGATGTTTTTAGTTTTGGGATTTTGTTGTTAGAGATTATTAGTGGTAGAAAAGCCATTGATGTTGGGTTTTCGCCGCCTTCGATTGTAGATTGGGCTATTCCATTGATTAGGAGAGGGAAGCTTTTGGGTATTTATGATCCAAGAATCCCCCCTCCTAGGGACCCTTTGGTGAGGAAGCAATTGGGGGTAATTGCGGCTAAATGTGTGAGGACTTGTAGGGAGAGAAGGCCGTCGATGAAGGAGGTTGTTGATTGCCTTAGTGGGTTGAGTAAATTAGTTCCTCTTCATTCTTGGAATGGTTTCACCAATCCTTGTTTGATGGTTGAAACAATGGGACGGCCAGTGGAAATGAAAGAAATCCGGTTGAATTCAAGGATGAATAGGGTCGAGGAAGGGGATTCAAATGGCTTTGATGCAAATTGTGCGAGGCCTTTGAAAAATTCGAGACGAGTTTATTCCGATTTAGGGTTTAGGTACAATTTGATGGATCTAATGGGTGGGGTTGATGGGGAATCCGAATTCTTGGGGGAGACTAGTGGGGTTGAGGCTAAATCAAGATTGAAAAATGGAAGTATGAGTTTTAGAAGTGAAAGTGAACGAGTTCGTAACCAGGGCAATGATAAACACGGTGTTTTTAGCTTGAGGAGAAACCAATCTGTTGGAGAAAATTCGGATTTGTATTTCAATAGACGCAATGCAATTACTAGATCGAGTTCTAGTGCCCGGGCAAATGCTGGCAGCTAG

Network for GWHGAAZE031737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	51	338	4.80E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.859
	SRR3591706	second leaf	24.708
	SRR3591707	mature leaf	8.323
	SRR3591708	Shoot apex	30.044
	SRR3591709	Stem	18.536
	SRR3591710	White floral bud	44.767
	SRR3591711	White flower	31.183
	SRR3591712	Green floral bud	38.766
	SRR3591713	Yellow flower	16.773
SRP173429	SRR8316895	Juvenile bud stage	17.570
	SRR8316896	Juvenile bud stage	18.264
	SRR8316897	Juvenile bud stage	6.191
	SRR8316894	Third green stage	10.256
	SRR8316900	Third green stage	31.982
	SRR8316901	Third green stage	28.451
	SRR8316898	Complete white stage	18.259
	SRR8316899	Complete white stage	94.995
	SRR8316903	Complete white stage	33.156
	SRR8316902	Silver flowering stage	12.328
	SRR8316904	Silver flowering stage	13.871
	SRR8316905	Silver flowering stage	7.672
	SRR8316906	Gold flowering stage	21.302
	SRR8316907	Gold flowering stage	19.178
	SRR8316908	Gold flowering stage	22.742
SRP132670	SRR6706286	Control	34.680
	SRR6706287	Light intensity 50%	38.139
	SRR6706288	Light intensity 20%	42.634
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.286
	CNS0095593	Slightly white alabastrum(diploid) 2	18.767
	CNS0095594	Slightly white alabastrum(diploid) 3	14.393
	CNS0095595	Whole white alabastrum(diploid) 2	20.231
	CNS0095596	Whole white alabastrum(diploid) 3	15.259
	CNS0095597	Whole white alabastrum(diploid) 4	16.974
	CNS0095598	Silvery flower (diploied) 1	26.320
	CNS0095599	Silvery flower (diploied) 2	17.546
	CNS0095600	Silvery flower (diploied) 3	28.423
	CNS0095601	Golden flower (diploid) 1	16.204
	CNS0095602	Golden flower (diploid) 2	26.000
	CNS0095603	Golden flower (diploid) 3	25.371
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.469
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	80.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.601
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.347
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.340
	CNS0095610	Silvery flower (tetraploid) 1	22.940
	CNS0095611	Silvery flower (tetraploid) 2	19.563
	CNS0095612	Silvery flower (tetraploid) 3	25.071
	CNS0095613	Golden flower (tetraploid) 1	13.901
	CNS0095614	Golden flower (tetraploid) 2	14.193
	CNS0095615	Golden flower (tetraploid) 3	20.112
CRA001975	CRR073297	Stem 1	33.853
	CRR073298	Stem 2	33.901
	CRR073299	Stem 3	35.956
	CRR073300	Leaf 1	36.903
	CRR073301	Leaf 2	36.544
	CRR073302	Leaf 3	35.654
	CRR073303	Juvenile bud 1	32.305
	CRR073304	Juvenile bud 2	26.184
	CRR073305	Juvenile bud 3	65.484
	CRR073306	Third green 1	17.968
	CRR073307	Third green 2	22.877
	CRR073308	Third green 3	21.269
	CRR073309	Second white 1	13.311
	CRR073310	Second white 2	12.152
	CRR073311	Second white 3	15.825
	CRR073312	Silver flowering 1	23.440
	CRR073313	Silver flowering 2	19.042
	CRR073314	Silver flowering 3	16.783
	CRR073315	Gold flowering 1	25.703
	CRR073316	Gold flowering 2	35.150
	CRR073317	Gold flowering 3	30.297
	CRR073318	Tawny withering 1	16.551
	CRR073319	Tawny withering 2	9.866
	CRR073320	Tawny withering 3	18.716