Gene detail

Detail information of GWHGAAZE031733

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272290.1	0	PREDICTED: protein transport protein SEC31 homolog B isoform X2 [Vitis vinifera]
COG	YP_001520948.1	0.000000006	WD repeat-containing protein
Swissprot	tr\|Q8L611\|SC31B_ARATH	0	Protein transport protein SEC31 homolog B {ECO:0000305}
trEMBL	tr\|A0A061DWZ7\|A0A061DWZ7_THECC	0	Transducin family protein / WD-40 repeat family protein isoform 1 {ECO:0000313\|EMBL:EOX96591.1}
TAIR10	AT3G63460.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64208179	64218313	+
GWHAAZE00000009	mRNA	64208179	64218313	+
GWHAAZE00000009	exon	64208179	64208558	+
GWHAAZE00000009	exon	64210350	64210404	+
GWHAAZE00000009	exon	64210504	64210626	+
GWHAAZE00000009	exon	64212090	64212186	+
GWHAAZE00000009	exon	64212268	64212304	+
GWHAAZE00000009	exon	64212420	64212525	+
GWHAAZE00000009	exon	64212602	64212659	+
GWHAAZE00000009	exon	64215019	64215116	+
GWHAAZE00000009	exon	64215254	64215373	+
GWHAAZE00000009	exon	64215974	64216016	+
GWHAAZE00000009	exon	64217067	64217176	+
GWHAAZE00000009	exon	64217260	64217387	+
GWHAAZE00000009	exon	64217477	64218029	+
GWHAAZE00000009	exon	64218200	64218313	+
GWHAAZE00000009	five_prime_UTR	64208179	64208241	+
GWHAAZE00000009	CDS	64208242	64208558	+
GWHAAZE00000009	CDS	64210350	64210404	+
GWHAAZE00000009	CDS	64210504	64210626	+
GWHAAZE00000009	CDS	64212090	64212186	+
GWHAAZE00000009	CDS	64212268	64212304	+
GWHAAZE00000009	CDS	64212420	64212525	+
GWHAAZE00000009	CDS	64212602	64212659	+
GWHAAZE00000009	CDS	64215019	64215116	+
GWHAAZE00000009	CDS	64215254	64215373	+
GWHAAZE00000009	CDS	64215974	64216016	+
GWHAAZE00000009	CDS	64217067	64217176	+
GWHAAZE00000009	CDS	64217260	64217387	+
GWHAAZE00000009	CDS	64217477	64218029	+
GWHAAZE00000009	CDS	64218200	64218313	+

Transcript Sequence
>GWHTAAZE031771 CAAATCCCCTCCTCTCTCTCTACAACAAATCTCTAATTCATACATCGTTGTGTGAATTTATCAATGGCATGCGTAAAGGAGGTGAACAGATCGGCCACGGTGGCGTTCTCGCCTGACGCACCGTACCTCGCCGGCGGAACGATGGCAGGAGCAGTGGATATATCGTTCAGCTCCTCGGCGCATCTCGAGATATATGAGCTCGATTTCAAGTCCGATGATCGTGTGTTACCTCTAGCTGGTAAAATGCCTAGTTCTGAGCCGTTTAATCGGTTGTCTTGGGGGAAGAATCCGTCAGGTTCTGATGAATTCTCTCTCGGTCTCATTGCCGGTGGTCTCGTCGATGGAAATATCGGTATTTGGAATCCTTCGTTACTGATCGGTTCCGAGGCAAATGAAAATGCTCTTGTTCAACAACTTTCGAGGCATAAAGGACCTGTTCGTGGTCTGGAATTTAATTCACTTTCACCAAACCATCTTGCTTCTGGGGCTGATGAAGGTGAAATCTGCATATGGGATATTTCAAAGCCCACAGAACCTACTCATTTTCCTCCTCTCAAGGGGAGTGGATCTGCTACTCAGTTGGAAATTTCCTTTTTATCATGGAATAGCAAGGTTCAACATATATTGGCATCCACTTCATTAAACGGGACAACCGTGGTTTGGGACTTAAGGAAGCAAAAGCCAGTTATAAGTTTCGCAGATTCAGTTAGAAGGCGGTGCTCTGTTCTGCAGTGGAACCCTGATTTTGCCACTCAGCTTATTGTTGCTTCGGATGAAGATAGTTCACCTTCTCTTCGGATTTGGGATATGCGGAATACAATGTCTCCATTGAGAGAGTTGGTGGGGCACACTAAAGGTGTTGTTGCGATGTCATGGTGTCCCAGTGATAGCTCCTATTTGCTTACCTGTGCTAAAGATAATCGCACTATTTGCTGGGACATGGTTTCTGCAGAGATCGTCTCTGAATTGCCAGCTGGAACCAACTGGAATTTTGATGTCCACTGGTATCCGAAGATACCCGGGGTTATATCAGCATCTTCATTTGATGGGAAAATTGGCATTTACAATATTGAGGCTTGTGGCCGATATGGGATTGGGGAGGGTGATTTTGGTGCAGCACCTTTGAGAGCCCCAAAGTGGTATAAACGTAAAGCTGGAGTTTCTTTTGGTTTTGGTGGCAAGCTTGTTTCATTTCACTCAACAGATGCTTCACCTGGATCTTCAGAGGTTCATGTGCATAACATAGTAACTGAAGACAGTTTGGTAAGTAGCTCTTCTGAATTTGAAGCGGCGGTGCAAAACGGGGACAGATCTTCACTGAGACTTCTATGCGATAAAAAATCACAAGAGTCAGAATCTGAAGATGACAGAGAAACATGGGGATTCTTGAAGGTTATGTTTGAAGATGATGGAACGGCAAGGACAAAGCTGCTTACCCACCTAGGGTTCACTCTACCTACTGAAGAAAAAGACACAGCGGAAGATAATCTATCCCAGGAATTAAGTTCTCTAGGTCTTGAAGATATGAAAGAAGAAGGAAATGTGGGGCATAAAGAGACAACTATTTACCCCCCGGATAATGGGGAAGACTTCTTTAACAATCTTCCTAGCCCTAAAGCCGACACTCCTGTGTCAACTTCTGCAAATAACTTTGCTGTCGAAAGCTCTGTTCCTAGTGCAGAAGAAATACAAATAGACAACGATGGACAAGAGGAGACTACCCACCCTTCATTTGATGATGCTGTCCAACGCGCTTTAGTTGTCGGGGACTACAAGGGGGCTGTTGCTCTGTGCATATCTGCAGAAAAAGTGGCAGATGCTTTAGTTATTGCTCATGTTGGTGGTGCTTCCTTGTGGGAGAGCACGCGCGATCAATATCTTAAGATGAGTCGTTCTCCTTACTTAAAGGTTGTCTCTGCAATGGTGAACAATGACCTCATGAGCCTTGTACATACCAGGCCTCTTAAGTCCTGGAAGGAAACCCTCGCTCTCCTTTGCACTGTAAGTTTGTCAACCTCTTAG

Network for GWHGAAZE031733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	254	292	0.13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14005	SEC31	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.844
	SRR3591706	second leaf	25.757
	SRR3591707	mature leaf	20.304
	SRR3591708	Shoot apex	26.224
	SRR3591709	Stem	28.107
	SRR3591710	White floral bud	26.195
	SRR3591711	White flower	28.611
	SRR3591712	Green floral bud	36.330
	SRR3591713	Yellow flower	23.318
SRP173429	SRR8316895	Juvenile bud stage	23.451
	SRR8316896	Juvenile bud stage	35.647
	SRR8316897	Juvenile bud stage	17.348
	SRR8316894	Third green stage	17.533
	SRR8316900	Third green stage	38.208
	SRR8316901	Third green stage	33.658
	SRR8316898	Complete white stage	8.102
	SRR8316899	Complete white stage	33.714
	SRR8316903	Complete white stage	21.844
	SRR8316902	Silver flowering stage	6.344
	SRR8316904	Silver flowering stage	10.507
	SRR8316905	Silver flowering stage	5.292
	SRR8316906	Gold flowering stage	19.081
	SRR8316907	Gold flowering stage	17.834
	SRR8316908	Gold flowering stage	19.667
SRP132670	SRR6706286	Control	29.958
	SRR6706287	Light intensity 50%	33.412
	SRR6706288	Light intensity 20%	38.033
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.376
	CNS0095593	Slightly white alabastrum(diploid) 2	14.645
	CNS0095594	Slightly white alabastrum(diploid) 3	16.638
	CNS0095595	Whole white alabastrum(diploid) 2	14.320
	CNS0095596	Whole white alabastrum(diploid) 3	13.762
	CNS0095597	Whole white alabastrum(diploid) 4	14.745
	CNS0095598	Silvery flower (diploied) 1	17.214
	CNS0095599	Silvery flower (diploied) 2	16.725
	CNS0095600	Silvery flower (diploied) 3	29.971
	CNS0095601	Golden flower (diploid) 1	12.053
	CNS0095602	Golden flower (diploid) 2	36.741
	CNS0095603	Golden flower (diploid) 3	35.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.615
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.508
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.358
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.294
	CNS0095610	Silvery flower (tetraploid) 1	31.970
	CNS0095611	Silvery flower (tetraploid) 2	31.763
	CNS0095612	Silvery flower (tetraploid) 3	19.906
	CNS0095613	Golden flower (tetraploid) 1	9.535
	CNS0095614	Golden flower (tetraploid) 2	26.480
	CNS0095615	Golden flower (tetraploid) 3	22.252
CRA001975	CRR073297	Stem 1	48.328
	CRR073298	Stem 2	47.250
	CRR073299	Stem 3	41.908
	CRR073300	Leaf 1	52.504
	CRR073301	Leaf 2	41.875
	CRR073302	Leaf 3	38.831
	CRR073303	Juvenile bud 1	40.632
	CRR073304	Juvenile bud 2	33.092
	CRR073305	Juvenile bud 3	58.512
	CRR073306	Third green 1	5.759
	CRR073307	Third green 2	5.113
	CRR073308	Third green 3	8.738
	CRR073309	Second white 1	11.490
	CRR073310	Second white 2	13.006
	CRR073311	Second white 3	13.104
	CRR073312	Silver flowering 1	13.314
	CRR073313	Silver flowering 2	16.843
	CRR073314	Silver flowering 3	12.935
	CRR073315	Gold flowering 1	15.045
	CRR073316	Gold flowering 2	25.863
	CRR073317	Gold flowering 3	22.096
	CRR073318	Tawny withering 1	27.490
	CRR073319	Tawny withering 2	16.408
	CRR073320	Tawny withering 3	28.256