Gene detail

Detail information of GWHGAAZE031678

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004981306.1	1.033E-23	PREDICTED: ADP-ribosylation factor-like isoform X3 [Setaria italica]
Swissprot	tr\|P51823\|ARF2_ORYSJ	3E-25	ADP-ribosylation factor 2
trEMBL	tr\|J3L559\|J3L559_ORYBR	9E-25	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB01G43650.1}
TAIR10	AT5G14670.1	5E-21	ADP-ribosylation factor A1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63076657	63089861	+
GWHAAZE00000009	mRNA	63076657	63089861	+
GWHAAZE00000009	exon	63076657	63076838	+
GWHAAZE00000009	exon	63077511	63077606	+
GWHAAZE00000009	exon	63080268	63080394	+
GWHAAZE00000009	exon	63089006	63089174	+
GWHAAZE00000009	exon	63089746	63089861	+
GWHAAZE00000009	CDS	63076657	63076838	+
GWHAAZE00000009	CDS	63077511	63077606	+
GWHAAZE00000009	CDS	63080268	63080394	+
GWHAAZE00000009	CDS	63089006	63089174	+
GWHAAZE00000009	CDS	63089746	63089861	+

Transcript Sequence
>GWHTAAZE031716 ATGGATGGATTAAGAAGAGAATCTAGGAACAAGAAACAAGAAACATCACCTCTTCGACATGAAATTTCGGATGAGGATAATCGAATTGGAATGGAAGAAATGAAAGAGGGAAGGGGAGGGGAGGCAAAGAGAAACGTTAATCGAAACTCAAAGCCTCCAAAAGAGGGGAGGGGAGGGGATTGCCCGACGTTGTTTACATTGTGCCGTCGCCGTCGTCTCCACAGGCCTCTGTCAATCCTTTCTCTCCATAATCAAGTCTTACTTTTTAAGCCTTTAAGTGTTCAATATGCGGTCGAGTTGTTTGGATTAATGGTTAACGAAAGCATTGGATTTGGCAAAGTTAGTTTATCCACAACACTGAAAGCATTATCCATGTCTGAGGCAGCTTGCTTGTTTAGCTGCACGGGATCATCAGCAAGAAAGAGAATGGGGTTAACATTCACCAAGCTTTTCAGCCGGCTCTTTGCTAAGAAAGAGATGCGTATTCTAATGGTTGGTCTCGATGCTGCTGGTAAGACAACCATATTGTACAAGCTCAAGCTTGGAGAGATCGTGACAACAATTCCTACCATTGTGAAACTGCGAAAGCTGTTCATTGAACAAGAAGGATCCTGCCAGATCCTTCTAGAAGGATGGGCCAACAAGCTTGCAGCCCATATGGGTACTCCTTGTACTCGCATTGATGCTTAA

Network for GWHGAAZE031678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00025.22	Arf	147	191	2.30E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07937	ARF1_2	Phospholipase D signaling pathway	map04072
K07937	ARF1_2	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.434
	SRR3591706	second leaf	29.187
	SRR3591707	mature leaf	21.199
	SRR3591708	Shoot apex	40.997
	SRR3591709	Stem	37.137
	SRR3591710	White floral bud	46.273
	SRR3591711	White flower	33.151
	SRR3591712	Green floral bud	43.894
	SRR3591713	Yellow flower	40.971
SRP173429	SRR8316895	Juvenile bud stage	27.058
	SRR8316896	Juvenile bud stage	31.758
	SRR8316897	Juvenile bud stage	17.100
	SRR8316894	Third green stage	15.808
	SRR8316900	Third green stage	52.434
	SRR8316901	Third green stage	53.376
	SRR8316898	Complete white stage	26.439
	SRR8316899	Complete white stage	56.606
	SRR8316903	Complete white stage	35.603
	SRR8316902	Silver flowering stage	20.132
	SRR8316904	Silver flowering stage	25.182
	SRR8316905	Silver flowering stage	16.823
	SRR8316906	Gold flowering stage	53.873
	SRR8316907	Gold flowering stage	48.073
	SRR8316908	Gold flowering stage	54.824
SRP132670	SRR6706286	Control	30.044
	SRR6706287	Light intensity 50%	49.622
	SRR6706288	Light intensity 20%	47.561
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.934
	CNS0095593	Slightly white alabastrum(diploid) 2	26.603
	CNS0095594	Slightly white alabastrum(diploid) 3	21.019
	CNS0095595	Whole white alabastrum(diploid) 2	27.828
	CNS0095596	Whole white alabastrum(diploid) 3	37.399
	CNS0095597	Whole white alabastrum(diploid) 4	31.675
	CNS0095598	Silvery flower (diploied) 1	20.550
	CNS0095599	Silvery flower (diploied) 2	20.772
	CNS0095600	Silvery flower (diploied) 3	29.497
	CNS0095601	Golden flower (diploid) 1	20.922
	CNS0095602	Golden flower (diploid) 2	33.881
	CNS0095603	Golden flower (diploid) 3	31.649
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.564
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.956
	CNS0095608	Whole white alabastrum(tetraploid) 2	37.288
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.287
	CNS0095610	Silvery flower (tetraploid) 1	33.428
	CNS0095611	Silvery flower (tetraploid) 2	32.693
	CNS0095612	Silvery flower (tetraploid) 3	31.575
	CNS0095613	Golden flower (tetraploid) 1	23.002
	CNS0095614	Golden flower (tetraploid) 2	32.895
	CNS0095615	Golden flower (tetraploid) 3	31.397
CRA001975	CRR073297	Stem 1	34.618
	CRR073298	Stem 2	25.807
	CRR073299	Stem 3	24.754
	CRR073300	Leaf 1	41.703
	CRR073301	Leaf 2	33.325
	CRR073302	Leaf 3	36.213
	CRR073303	Juvenile bud 1	36.036
	CRR073304	Juvenile bud 2	37.903
	CRR073305	Juvenile bud 3	24.916
	CRR073306	Third green 1	33.282
	CRR073307	Third green 2	29.416
	CRR073308	Third green 3	23.187
	CRR073309	Second white 1	20.108
	CRR073310	Second white 2	20.153
	CRR073311	Second white 3	11.679
	CRR073312	Silver flowering 1	12.055
	CRR073313	Silver flowering 2	12.666
	CRR073314	Silver flowering 3	9.481
	CRR073315	Gold flowering 1	14.129
	CRR073316	Gold flowering 2	11.804
	CRR073317	Gold flowering 3	11.807
	CRR073318	Tawny withering 1	16.565
	CRR073319	Tawny withering 2	14.622
	CRR073320	Tawny withering 3	18.727