Gene detail

Detail information of GWHGAAZE031675

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO99648.1	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TWD1\|A0A068TWD1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99648.1}
TAIR10	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63033056	63040041	-
GWHAAZE00000009	mRNA	63033056	63040041	-
GWHAAZE00000009	exon	63033056	63033493	-
GWHAAZE00000009	exon	63034671	63035126	-
GWHAAZE00000009	exon	63037383	63037553	-
GWHAAZE00000009	exon	63037645	63037829	-
GWHAAZE00000009	exon	63038529	63040041	-
GWHAAZE00000009	CDS	63038529	63040041	-
GWHAAZE00000009	CDS	63037645	63037829	-
GWHAAZE00000009	CDS	63037383	63037553	-
GWHAAZE00000009	CDS	63034671	63035126	-
GWHAAZE00000009	CDS	63033056	63033493	-

Transcript Sequence
>GWHTAAZE031713 ATGTCGTCCATTCCTCAAGAGCTTTATCCGAGCCAAGATGATCTTCTATACGAAGAAGAGTTACTCAGAAACCCTTTCAGCCTCAAGCTATGGTGGAGATACTTAATTGCAAGAACTGAATCTCCTTTCCAAAAGCGATCCATCATCTATGAGCGAGCAGTAAAAGCCCTACCGGGAAGCTACAAACTTTGGTATGCTTACCTTCGCGAACGCCTAGAACTTGTTCGCAATTTACCCATCACTCACTCACAGTACCAAACACTGAATAATACTTTTGAAAGGGCTTTGGTCACTATGCACAAAATGCCACGGATTTGGATAATGTATTTGCAAACATTGACCAATCAGAAACTCGTTTCTCGCACTCGCCACACGTTTGATAGGGCTCTGTGTGCATTGCCAGTGACTCAGCATGATCGAATTTGGGAGCCCTATTTGGTGTTTGTGAGCCAGAGGGGTGTACCAATTGAGACTTCACTTAGAGTTTATAGGAGGTATTTGAAGTATGATCCATCTCACATTGAGGATTTTATTGAGTTTCTGGTGAGTTCTAGTCTTTGGCAAGAGGCTGCAGAGAGATTAGCTGCCGTTTTGAATGATAATCAGTTTTATTCAATTAAGGGTAAGACAAAACATAGGCTGTGGTTGGAGTTGTGTGATTTGCTTACCCAGCATGCTACTGAGATTTCGGGGTTGAATGTGGATGCTATAATTAGGGGAGGAATTAGGAAGTTTACGGATGAGGTGGGCCGGCTTTGGACTTCGTTGGCTGATTATTATATTAGGAGGAAGTTAGTTGAGAAGGCAAGGGATATTTTTGAAGAGGGGATGACTACTGTTGTCACAGTCAGGGATTTTAGCGTAATTTTCGATGCGTACTCCCAGTTTGAAGAAAGTATGCTTGCTTTGAAAATGGAAGGAATGAGTGAGAGCGAGGAAGAGGATCAAGATGAAGATGAAGATGAATATGCGGATAAAGACAAGTCTGTTGAGGATCTTGATGATGATGAAGATGACCGTTTAGACATTGTTAAGTTAGAGAAGAAGCTTGAGGAATTTTGGTTGTGTGATGATAAAGATGTGAATTTGAGGCTAGCCCGGTTGGAACATCTTATGGATAGGAGGCCCGAACTGGCTAATAGTGTCCTCCTTCGCCAAAACCCGCACAATGTGGAACAATGGCATCGGAGGGTTAAGCTTTTCGAGGGTAACCCAACGAAGCAAATATTGACTTACACTGAAGCTGTGAGGACGATTGATCCAATGAAAGCTGTGGGGAAGCCTCATACTTTGTGGGTTGCCTTTGCCAAACTATATGAAAGCCACAACGATATTGCTAATGCCAGAGTAATATTTGATAAGGCAGTACAAGTGAACTTCAAAGCTGTGGATAATCTGGCTAGTGTTTGGTGTGAATGGGCCGAGATCGAACTAAAGCACAAAAATTTTGGAGGTGCACTGGAGCTGATGAGGCGGGCCACAGCAGAGCCTTCCGTAGAGGTCAAACGAAGAGTGGCTGCTGATGGTAATGAACCGGTGCAAATCAAGCTGCACAAATCTCTAAGGCTTTGGACATTCTATGTGGATTTGGAGGAGAGCCTAGGTACCCTGGAGTCAACTCGTGCTGTTTACGAGCGGATATTGGATCTAAGAATAGCCACACCCCAAATAATAATTAACTATGCAACTCTTTTGGAAGATAACAAGTACTTCGAGGATGCTTTCAAGGTTTACGAGAGAGGTGTGAAGATTTTCAAGTACCCGCATGTAAAGGACATATGGGTGACTTACCTCTCGAAATTCGTCAAGAGATACGGGAAGTCAAAATTGGAAAGGGCAAGGGAATTATTTGAGCATGCTGTTGAAGTGGCCCCTGCTGAAGTGGTGAAGCCACTGTATCTACAATATGCGAAATTGGAAGAGGACTATGGGCTCGCCAAGCGAGCCATGAAGGTGTATGATCAGGCAACGAAGGCCGTTCCAGCAAATGAAAAACTGGGCATGTATGAAATCTATATAGCTCGTGCAGCTGAAATATTTGGCGTTCCAAAAACAAGGGAAATATATGAGCAAGCAATTGAAACGGGCCGTCTTCCAGATAAGGATGTGAAGACAATGTGCATGAAGTATGCTGAGCTCGAGAAGAGCCTTGGAGAAATAGACCGTGCTCGTGGGATTTACCAACACGCTGCCGATTTTGCAGAGCCTCGATCTCATGCCGACTTTTGGAACAAATGGCACGAGTTCGAGGTGCAGCATGGAAATGAGAACACCTTCCGAGAAATGCTTCGTATCAAAAGGAGTGTTTCTGCGAAGTATAGCCAAACCCACATCTTTATGCCAGAGTATCACATGCAGAAGGAACCAGACGCCCCTTCAGCGGGACTACCCGGTGATGAGATGGCGGCTCTGGAACGACAATTAACCCCTGCAGCCGCCAACGACACAGCTGCCAAAGACGCCCCCCGGAAATTGGGGTTTGTGAGTGCCGGGGTTGAGTCACAGCCAGATGGCGGTCAAAGAGGGGCTGTGAATCACGAGGAGGATATCGAACTCCCCGAGGAGAGTGATGGCGAAGAAGATGTTGAGAAAGTCGAGATCAGTCAAAAAGAGGTCCCCACTGCTGTTTTTGGTGGTTTGGTCCGAAAAAGAGAGGGCAATGATGATGGGGATGGGGATGATGATTCTGCAGCGAAAAGTAAAGACAGTGATGAGCATCTCGGTGCACTGGAGAGGATAAAGAGAATGAGGCGAGGCGGATAG

Network for GWHGAAZE031675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12867	SYF1, XAB2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.439
	SRR3591706	second leaf	12.812
	SRR3591707	mature leaf	12.635
	SRR3591708	Shoot apex	22.598
	SRR3591709	Stem	14.113
	SRR3591710	White floral bud	20.243
	SRR3591711	White flower	23.533
	SRR3591712	Green floral bud	22.811
	SRR3591713	Yellow flower	15.789
SRP173429	SRR8316895	Juvenile bud stage	13.250
	SRR8316896	Juvenile bud stage	16.824
	SRR8316897	Juvenile bud stage	8.173
	SRR8316894	Third green stage	6.734
	SRR8316900	Third green stage	17.117
	SRR8316901	Third green stage	17.934
	SRR8316898	Complete white stage	6.257
	SRR8316899	Complete white stage	19.775
	SRR8316903	Complete white stage	13.570
	SRR8316902	Silver flowering stage	6.456
	SRR8316904	Silver flowering stage	12.684
	SRR8316905	Silver flowering stage	5.695
	SRR8316906	Gold flowering stage	17.466
	SRR8316907	Gold flowering stage	15.931
	SRR8316908	Gold flowering stage	18.507
SRP132670	SRR6706286	Control	19.861
	SRR6706287	Light intensity 50%	19.479
	SRR6706288	Light intensity 20%	19.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.163
	CNS0095593	Slightly white alabastrum(diploid) 2	8.448
	CNS0095594	Slightly white alabastrum(diploid) 3	10.144
	CNS0095595	Whole white alabastrum(diploid) 2	9.298
	CNS0095596	Whole white alabastrum(diploid) 3	8.930
	CNS0095597	Whole white alabastrum(diploid) 4	9.526
	CNS0095598	Silvery flower (diploied) 1	16.043
	CNS0095599	Silvery flower (diploied) 2	11.665
	CNS0095600	Silvery flower (diploied) 3	20.272
	CNS0095601	Golden flower (diploid) 1	12.940
	CNS0095602	Golden flower (diploid) 2	24.765
	CNS0095603	Golden flower (diploid) 3	21.558
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.491
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.977
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.419
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.408
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.308
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.503
	CNS0095610	Silvery flower (tetraploid) 1	22.326
	CNS0095611	Silvery flower (tetraploid) 2	20.892
	CNS0095612	Silvery flower (tetraploid) 3	18.119
	CNS0095613	Golden flower (tetraploid) 1	11.078
	CNS0095614	Golden flower (tetraploid) 2	18.515
	CNS0095615	Golden flower (tetraploid) 3	18.072
CRA001975	CRR073297	Stem 1	28.524
	CRR073298	Stem 2	27.318
	CRR073299	Stem 3	30.066
	CRR073300	Leaf 1	27.117
	CRR073301	Leaf 2	24.145
	CRR073302	Leaf 3	18.535
	CRR073303	Juvenile bud 1	19.917
	CRR073304	Juvenile bud 2	16.163
	CRR073305	Juvenile bud 3	28.198
	CRR073306	Third green 1	10.621
	CRR073307	Third green 2	8.078
	CRR073308	Third green 3	10.798
	CRR073309	Second white 1	10.524
	CRR073310	Second white 2	12.131
	CRR073311	Second white 3	12.804
	CRR073312	Silver flowering 1	12.784
	CRR073313	Silver flowering 2	16.160
	CRR073314	Silver flowering 3	11.951
	CRR073315	Gold flowering 1	11.213
	CRR073316	Gold flowering 2	15.735
	CRR073317	Gold flowering 3	12.807
	CRR073318	Tawny withering 1	18.130
	CRR073319	Tawny withering 2	14.005
	CRR073320	Tawny withering 3	14.812