Detail information of GWHGAAZE031664


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010928849.19.0637E-137PREDICTED: ras-related protein RGP1 [Elaeis guineensis]
COGYP_008431664.15E-24hypothetical protein N186_01315
Swissprottr|P25766|RLGP1_ORYSJ1E-126Ras-related protein RGP1
trEMBLtr|A0A059BJ46|A0A059BJ46_EUCGR5E-136Uncharacterized protein {ECO:0000313|EMBL:KCW66128.1}
TAIR10AT3G12160.18E-99RAB GTPase homolog A4D

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6290213762905677+
GWHAAZE00000009mRNA6290213762905677+
GWHAAZE00000009exon6290213762902363+
GWHAAZE00000009exon6290523062905677+
GWHAAZE00000009CDS6290213762902363+
GWHAAZE00000009CDS6290523062905677+
Transcript Sequence

Network for GWHGAAZE031664

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras171773.70E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.183
SRR3591706second leaf13.645
SRR3591707mature leaf17.339
SRR3591708Shoot apex13.877
SRR3591709Stem30.858
SRR3591710White floral bud30.961
SRR3591711White flower29.734
SRR3591712Green floral bud27.858
SRR3591713Yellow flower26.953
SRP173429 SRR8316895Juvenile bud stage 15.024
SRR8316896Juvenile bud stage 19.399
SRR8316897Juvenile bud stage 8.682
SRR8316894Third green stage 10.693
SRR8316900Third green stage 36.864
SRR8316901Third green stage 40.605
SRR8316898Complete white stage 20.628
SRR8316899Complete white stage 76.277
SRR8316903Complete white stage 36.585
SRR8316902Silver flowering stage18.645
SRR8316904Silver flowering stage29.426
SRR8316905Silver flowering stage12.781
SRR8316906Gold flowering stage 45.919
SRR8316907Gold flowering stage 39.047
SRR8316908Gold flowering stage 41.787
SRP132670SRR6706286Control55.519
SRR6706287Light intensity 50%57.788
SRR6706288Light intensity 20%59.560
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.308
CNS0095593Slightly white alabastrum(diploid) 231.417
CNS0095594Slightly white alabastrum(diploid) 319.555
CNS0095595Whole white alabastrum(diploid) 223.868
CNS0095596Whole white alabastrum(diploid) 321.683
CNS0095597Whole white alabastrum(diploid) 420.111
CNS0095598Silvery flower (diploied) 128.257
CNS0095599Silvery flower (diploied) 223.972
CNS0095600Silvery flower (diploied) 347.428
CNS0095601Golden flower (diploid) 119.328
CNS0095602Golden flower (diploid) 235.979
CNS0095603Golden flower (diploid) 334.925
CNS0095604Slightly white alabastrum(tetraploid) 121.470
CNS0095605Slightly white alabastrum(tetraploid) 220.132
CNS0095606Slightly white alabastrum(tetraploid) 340.803
CNS0095607Whole white alabastrum(tetraploid) 115.156
CNS0095608Whole white alabastrum(tetraploid) 219.540
CNS0095609Whole white alabastrum(tetraploid) 333.693
CNS0095610Silvery flower (tetraploid) 151.019
CNS0095611Silvery flower (tetraploid) 239.324
CNS0095612Silvery flower (tetraploid) 334.020
CNS0095613Golden flower (tetraploid) 126.769
CNS0095614Golden flower (tetraploid) 239.792
CNS0095615Golden flower (tetraploid) 322.218
CRA001975CRR073297Stem 123.926
CRR073298Stem 226.178
CRR073299Stem 327.822
CRR073300Leaf 145.679
CRR073301Leaf 242.084
CRR073302Leaf 338.927
CRR073303Juvenile bud 165.429
CRR073304Juvenile bud 255.188
CRR073305Juvenile bud 361.686
CRR073306Third green 124.223
CRR073307Third green 225.007
CRR073308Third green 327.748
CRR073309Second white 124.115
CRR073310Second white 220.946
CRR073311Second white 315.134
CRR073312Silver flowering 18.682
CRR073313Silver flowering 210.965
CRR073314Silver flowering 311.291
CRR073315Gold flowering 112.433
CRR073316Gold flowering 222.592
CRR073317Gold flowering 318.080
CRR073318Tawny withering 151.981
CRR073319Tawny withering 243.451
CRR073320Tawny withering 351.716