Gene detail

Detail information of GWHGAAZE031647

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087152.1	0	PREDICTED: probable serine/threonine-protein kinase DDB_G0280111 isoform X3 [Sesamum indicum]
COG	NP_389459.1	0.00000004	serine/threonine protein kinase
Swissprot	tr\|Q2QMH1\|NEK2_ORYSJ	1E-11	Serine/threonine-protein kinase Nek2
trEMBL	tr\|F6HPW0\|F6HPW0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56716.1}
TAIR10	AT2G32850.2	9E-137	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	62431236	62441674	-
GWHAAZE00000009	mRNA	62431236	62441674	-
GWHAAZE00000009	exon	62431236	62431765	-
GWHAAZE00000009	exon	62432269	62432355	-
GWHAAZE00000009	exon	62432470	62432532	-
GWHAAZE00000009	exon	62437303	62437949	-
GWHAAZE00000009	exon	62438638	62438688	-
GWHAAZE00000009	exon	62438835	62439060	-
GWHAAZE00000009	exon	62439622	62439672	-
GWHAAZE00000009	exon	62439761	62439860	-
GWHAAZE00000009	exon	62441208	62441674	-
GWHAAZE00000009	CDS	62441208	62441674	-
GWHAAZE00000009	CDS	62439761	62439860	-
GWHAAZE00000009	CDS	62439622	62439672	-
GWHAAZE00000009	CDS	62438835	62439060	-
GWHAAZE00000009	CDS	62438638	62438688	-
GWHAAZE00000009	CDS	62437303	62437949	-
GWHAAZE00000009	CDS	62432470	62432532	-
GWHAAZE00000009	CDS	62432269	62432355	-
GWHAAZE00000009	CDS	62431505	62431765	-
GWHAAZE00000009	three_prime_UTR	62431236	62431504	-

Transcript Sequence
>GWHTAAZE031685 ATGTGGAGATTCAAATCCTTCACGCAAAAAGAACAAACTGGACTCGAAGGTCGGACAATTGAAGTCGGCAATCTGAAAATCACTATCCGCAATGCCATCGCTGAGGGTGGATTCTCTTGTGTTTACTTAGCTAGAGATGCTGTTAACGGTTCAAAACAGTATGCAGTGAAGCACATCATTTGTAATGACCAAGAATCTCTAGGCCTTGTAATGAAAGAAATCTCGGTGATGAAATCACTTCGAGGACACCCTAATATTGTAATGCTGTATGCCCATACCATCTTTGATATGGGTCGGACCAAGGAAGCTCTCCTTGTTATGGAGCATTGTGAGAAGTCAATGGTTAAGTTGCTGGAGAGCAGAGGAGGAGCTGGGTACTTTGAAGAGAAACAGATCCTTGCAATGTTTAGAGATATCTGTAACGCAGTCTTTGCAATGCACTGCCAGTCCCCACCCATTGCTCACAGCATTTCTACCAATCATAAGCGCTTTGAGAAGGCTGAAGACATGGGCATAGAAGAAGACAATATCAGGAAGCATACTACACCCGCCTATAGAGCTCCTGAGATGTGGGATTTGTTACGTAGAGAATTTATAAATGAGAAGGTTGACATATGGGCCCTTGGGTGTCTCCTCTTTCGCATATGCTACTTGAAGCCTGCATTTGATGGTGAATCAAAGCTACAAGTTTTGAACGGGAACTACTGTATTCCAGATTTGCCGAATTACAATCATGCCATCAAAGACCTAATCAAGGGCATGCTTCATCCTTCACCGAATGCCAGACCAGACATCACGCAGGCAAGCTCTTTGCTTGATTGGCCATTCATCTCCATGAATTTAGCACCTGATACCCCTCCAGAAATGCCCCAAAATGGTACTGACAAACATGAAGGAACTTCAAGGCCTGCAAATACTGCTACTCAAATGTCTCGTAGAAGCCCGTCACCTTCAAATACAGCTACTCCAGTGCCTCGTAGAAGCCCATCACCTTCAAATACAGCTACTCCAGTGCCTCGTAGAAGCCCATCACCTTCAAATACAGACCCAGCTCGAAACAGACCACTGGGTGCATTTTGGAACACACAGCATGCTAAGGACTCGGAAAGTAGCAAAAGGCGTCCCATGCCCTCGAAACCCGAGCCCACAGCTGCTGTTAACACCAATGCCTTAAATGCTTTTGTGGCCAACTTCTCTAAACCAGAGACCACAACCACTGTTAACACTGGTGCCTTCAATGCTTTTGTGGCCGAATTTGGTATTGATAATAAACCCGGCCCTGGGAGTAATAACAGTAAGAAACCTTTGAAAGAGGAACTGTTAGAGGGGGAGGTGGAAAGGCTTAAAGAACAGCTGAAGCAAGCGAATGTGGAGAAGGGCGAGGTTAACTCAAAGTGTGAAAAGTTGACCGCGATTTGCCGATCGCAGCAGCAAGAGATACAAGGTCTTAAGCAAGCTCTTGCTTCGAGAATTCAATCTCCAACAATAGATGCCTCGAGGAATCAAACCTCTCCTGGAGTTCAACTTTCGACGACCCAGCAGATTTTGAGTGGTGGGAATAGTGAAGGTAAAAAGGGAGTGAAGAATAGAGAGTTGAGAGCAGAGTGCTGTTATCAGAGTGGGGATGGAAGTAGAGGTGTAGACGGGGTGATTGACGACTCAACGTTGCTGCGGTGGATCGGCGTTGCTGTGCCCAAGGAGAAGGTCCAAGGAACCGTTTGGGGGCTCCAACAAGGCCTATTCGACAAGAACTCCCGGAGCCCGCCCGATCCTCAACCATGGCAGGCTTTTCCGGCCACAGGCGTAAATTCTGGGGCTACCTCATCATGGGGTTTTGGGTCAGATAGCTTTATGCTGAATCCTACCGCCACTTCTCAGGTTTCCAAGCCTTTTAGCGATTCAAAGAAAGTAGAAAAGTCAACCTCTCAACCGGCCGGATGGGCGGGTTTCTAGTCGTAAAAAATCTGAAGAGATTTGGTGTGAAATTTACACAGGTAATTATTATGTTCATCTTGTTTTGAAGGTAAAGAGAAAAGAAGAATATGTGGGTTCATTGGGCTTGTTTATTGCTTCTGACTATCGTGTTTTTGTAGAATTGGTTTTAATAGAAAAGGAATTTTTTTTTAATTTATTTATCAGCTTTTGTTAAGTGTATTGTTTTTCATGTCCATGTTCATGGGTAGGAAAATAATTTATGTTATCATTTCTGTTTGTATATAATA

Network for GWHGAAZE031647

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	31	268	2.40E-25

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	NAK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.068
	SRR3591706	second leaf	5.441
	SRR3591707	mature leaf	1.857
	SRR3591708	Shoot apex	8.006
	SRR3591709	Stem	3.697
	SRR3591710	White floral bud	6.332
	SRR3591711	White flower	2.577
	SRR3591712	Green floral bud	7.597
	SRR3591713	Yellow flower	6.701
SRP173429	SRR8316895	Juvenile bud stage	2.556
	SRR8316896	Juvenile bud stage	3.948
	SRR8316897	Juvenile bud stage	1.533
	SRR8316894	Third green stage	2.211
	SRR8316900	Third green stage	6.282
	SRR8316901	Third green stage	5.467
	SRR8316898	Complete white stage	0.377
	SRR8316899	Complete white stage	3.236
	SRR8316903	Complete white stage	1.228
	SRR8316902	Silver flowering stage	0.284
	SRR8316904	Silver flowering stage	0.453
	SRR8316905	Silver flowering stage	0.080
	SRR8316906	Gold flowering stage	0.905
	SRR8316907	Gold flowering stage	0.460
	SRR8316908	Gold flowering stage	0.351
SRP132670	SRR6706286	Control	3.536
	SRR6706287	Light intensity 50%	3.909
	SRR6706288	Light intensity 20%	4.401
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.239
	CNS0095593	Slightly white alabastrum(diploid) 2	3.175
	CNS0095594	Slightly white alabastrum(diploid) 3	3.795
	CNS0095595	Whole white alabastrum(diploid) 2	4.753
	CNS0095596	Whole white alabastrum(diploid) 3	5.542
	CNS0095597	Whole white alabastrum(diploid) 4	6.006
	CNS0095598	Silvery flower (diploied) 1	2.554
	CNS0095599	Silvery flower (diploied) 2	2.119
	CNS0095600	Silvery flower (diploied) 3	1.076
	CNS0095601	Golden flower (diploid) 1	2.143
	CNS0095602	Golden flower (diploid) 2	2.692
	CNS0095603	Golden flower (diploid) 3	2.532
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.393
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.266
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.649
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.612
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.776
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.075
	CNS0095610	Silvery flower (tetraploid) 1	0.347
	CNS0095611	Silvery flower (tetraploid) 2	0.981
	CNS0095612	Silvery flower (tetraploid) 3	1.440
	CNS0095613	Golden flower (tetraploid) 1	0.150
	CNS0095614	Golden flower (tetraploid) 2	0.189
	CNS0095615	Golden flower (tetraploid) 3	0.718
CRA001975	CRR073297	Stem 1	6.763
	CRR073298	Stem 2	6.870
	CRR073299	Stem 3	4.897
	CRR073300	Leaf 1	7.743
	CRR073301	Leaf 2	7.636
	CRR073302	Leaf 3	4.085
	CRR073303	Juvenile bud 1	4.611
	CRR073304	Juvenile bud 2	3.344
	CRR073305	Juvenile bud 3	4.185
	CRR073306	Third green 1	0.769
	CRR073307	Third green 2	0.970
	CRR073308	Third green 3	0.852
	CRR073309	Second white 1	0.136
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.305
	CRR073312	Silver flowering 1	1.331
	CRR073313	Silver flowering 2	0.764
	CRR073314	Silver flowering 3	0.560
	CRR073315	Gold flowering 1	3.355
	CRR073316	Gold flowering 2	3.359
	CRR073317	Gold flowering 3	2.769
	CRR073318	Tawny withering 1	3.194
	CRR073319	Tawny withering 2	2.375
	CRR073320	Tawny withering 3	5.003