Gene detail

Detail information of GWHGAAZE031642

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009617361.1	1.8005E-108	PREDICTED: homeobox-leucine zipper protein HOX11-like [Nicotiana tomentosiformis]
Swissprot	tr\|P46665\|HAT14_ARATH	3E-85	Homeobox-leucine zipper protein HAT14
trEMBL	tr\|K4AXD6\|K4AXD6_SOLLC	1E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g073910.2.1}
TAIR10	AT5G06710.1	5E-56	homeobox from Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	62290307	62291838	+
GWHAAZE00000009	mRNA	62290307	62291838	+
GWHAAZE00000009	exon	62290307	62290663	+
GWHAAZE00000009	exon	62290930	62291081	+
GWHAAZE00000009	exon	62291466	62291838	+
GWHAAZE00000009	CDS	62290307	62290663	+
GWHAAZE00000009	CDS	62290930	62291081	+
GWHAAZE00000009	CDS	62291466	62291838	+

Transcript Sequence
>GWHTAAZE031680 ATGATGATGATATGGTGTACAGGGAGTTCGGAAGGCGGTTCGTCGGGAAACGTGGGGTTTCCGGCGGCATCGGCGGCGAGGGGGTTTGACGTGAACAGGACGCCGGCGGCGGGTGGAGAGGAGGTGTCGTCGCCGAACAGCGTGGCGTCATCTTTTCAGATGGATTTTGGGATATTCAGAAGGGGAAATAATAAGAGGGATTCGGCTGGGAATGACGTAGTTGAGGGTGGTGAAAGGGCATCTTCTAGAGCAAGTGATGAAGACGAAAATGCCCTTGCTAGGAAGAAACTTCGACTCTCGAAGGAACAGTCTGCTTTTTTGGAAGAAAGCTTCAAGGAACACAACACCCTCAATCCTAAACAAAAGCTTGCACTTGCCAAACAGCTTAATCTCCGGCCTCGTCAAGTCGAAGTCTGGTTTCAGAACAGAAGGGCAAGGTATTGCTATTATTATTATTTGTATCTATAAATATAATTAAATATGTTATTATTATTATTATTATTGTCCGTGACGAAGTTGAAGCAAACAGAGGTTGATTGCGAGTACTTAAAGAGGTGCTGTGAAACATTGACGGAAGAAAACAGAAGGTTGCACAAAGAGCTTCAAGAATTAAGAGCCCTCAAGACTTCTAACCCATTTTACATGCAACTTCCTGCCACCACCCTCACCATGTGCCCCTCTTGTGAACGTGTTGCCACCACTGGCGCCCCTCCGACTGCTACAACTACTACCACAGCTGCCGCCGCCAAGCCCGTTACCTCAAAACCGACCCCCACCCCGACCACCACCACCACTGCCTTGACTCTATCTAGACAAAGGCTAATTTACCCATTCTCCAATACTACCGCAAACAACCACCCCCATCAGTCTGCAGCCTCATGA

Network for GWHGAAZE031642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	94	147	2.60E-15
PF02183.19	HALZ	172	206	9.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.399
	SRR3591706	second leaf	1.309
	SRR3591707	mature leaf	3.679
	SRR3591708	Shoot apex	12.666
	SRR3591709	Stem	4.523
	SRR3591710	White floral bud	4.763
	SRR3591711	White flower	15.533
	SRR3591712	Green floral bud	0.950
	SRR3591713	Yellow flower	51.927
SRP173429	SRR8316895	Juvenile bud stage	1.129
	SRR8316896	Juvenile bud stage	2.102
	SRR8316897	Juvenile bud stage	0.389
	SRR8316894	Third green stage	1.693
	SRR8316900	Third green stage	1.714
	SRR8316901	Third green stage	1.521
	SRR8316898	Complete white stage	1.066
	SRR8316899	Complete white stage	2.952
	SRR8316903	Complete white stage	4.161
	SRR8316902	Silver flowering stage	15.874
	SRR8316904	Silver flowering stage	12.897
	SRR8316905	Silver flowering stage	11.068
	SRR8316906	Gold flowering stage	43.573
	SRR8316907	Gold flowering stage	36.806
	SRR8316908	Gold flowering stage	31.788
SRP132670	SRR6706286	Control	3.893
	SRR6706287	Light intensity 50%	2.443
	SRR6706288	Light intensity 20%	2.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.686
	CNS0095593	Slightly white alabastrum(diploid) 2	2.868
	CNS0095594	Slightly white alabastrum(diploid) 3	4.044
	CNS0095595	Whole white alabastrum(diploid) 2	3.295
	CNS0095596	Whole white alabastrum(diploid) 3	3.241
	CNS0095597	Whole white alabastrum(diploid) 4	2.893
	CNS0095598	Silvery flower (diploied) 1	38.921
	CNS0095599	Silvery flower (diploied) 2	18.253
	CNS0095600	Silvery flower (diploied) 3	34.650
	CNS0095601	Golden flower (diploid) 1	46.271
	CNS0095602	Golden flower (diploid) 2	58.448
	CNS0095603	Golden flower (diploid) 3	55.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.084
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.410
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.856
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.858
	CNS0095610	Silvery flower (tetraploid) 1	30.855
	CNS0095611	Silvery flower (tetraploid) 2	28.950
	CNS0095612	Silvery flower (tetraploid) 3	25.955
	CNS0095613	Golden flower (tetraploid) 1	46.876
	CNS0095614	Golden flower (tetraploid) 2	33.499
	CNS0095615	Golden flower (tetraploid) 3	81.674
CRA001975	CRR073297	Stem 1	9.959
	CRR073298	Stem 2	9.186
	CRR073299	Stem 3	10.163
	CRR073300	Leaf 1	5.985
	CRR073301	Leaf 2	6.009
	CRR073302	Leaf 3	4.322
	CRR073303	Juvenile bud 1	3.497
	CRR073304	Juvenile bud 2	1.147
	CRR073305	Juvenile bud 3	4.341
	CRR073306	Third green 1	36.479
	CRR073307	Third green 2	25.297
	CRR073308	Third green 3	28.614
	CRR073309	Second white 1	82.403
	CRR073310	Second white 2	67.918
	CRR073311	Second white 3	42.980
	CRR073312	Silver flowering 1	46.554
	CRR073313	Silver flowering 2	35.248
	CRR073314	Silver flowering 3	21.236
	CRR073315	Gold flowering 1	8.108
	CRR073316	Gold flowering 2	9.211
	CRR073317	Gold flowering 3	12.876
	CRR073318	Tawny withering 1	15.575
	CRR073319	Tawny withering 2	13.567
	CRR073320	Tawny withering 3	11.163