Detail information of GWHGAAZE031641


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006359161.11.87934E-73PREDICTED: uncharacterized protein LOC102598553 [Solanum tuberosum]
Swissprottr|Q6R567|RMA1_CAPAN3E-16E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|M1A763|M1A763_SOLTU6E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400016144}
TAIR10AT2G44410.11E-26RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6223588562236718+
GWHAAZE00000009mRNA6223588562236718+
GWHAAZE00000009exon6223588562236718+
GWHAAZE00000009CDS6223588562236718+
Transcript Sequence

Network for GWHGAAZE031641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14634.7zf-RING_53362.50E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.148
SRR3591706second leaf23.047
SRR3591707mature leaf23.715
SRR3591708Shoot apex40.164
SRR3591709Stem32.668
SRR3591710White floral bud31.421
SRR3591711White flower38.959
SRR3591712Green floral bud35.509
SRR3591713Yellow flower40.961
SRP173429 SRR8316895Juvenile bud stage 15.444
SRR8316896Juvenile bud stage 17.765
SRR8316897Juvenile bud stage 7.997
SRR8316894Third green stage 8.840
SRR8316900Third green stage 25.155
SRR8316901Third green stage 24.348
SRR8316898Complete white stage 11.960
SRR8316899Complete white stage 43.872
SRR8316903Complete white stage 16.958
SRR8316902Silver flowering stage12.313
SRR8316904Silver flowering stage16.009
SRR8316905Silver flowering stage7.496
SRR8316906Gold flowering stage 25.846
SRR8316907Gold flowering stage 24.738
SRR8316908Gold flowering stage 30.688
SRP132670SRR6706286Control29.462
SRR6706287Light intensity 50%29.978
SRR6706288Light intensity 20%30.029
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.728
CNS0095593Slightly white alabastrum(diploid) 225.746
CNS0095594Slightly white alabastrum(diploid) 318.930
CNS0095595Whole white alabastrum(diploid) 221.070
CNS0095596Whole white alabastrum(diploid) 320.033
CNS0095597Whole white alabastrum(diploid) 418.764
CNS0095598Silvery flower (diploied) 128.690
CNS0095599Silvery flower (diploied) 222.088
CNS0095600Silvery flower (diploied) 330.170
CNS0095601Golden flower (diploid) 123.844
CNS0095602Golden flower (diploid) 231.985
CNS0095603Golden flower (diploid) 332.817
CNS0095604Slightly white alabastrum(tetraploid) 128.010
CNS0095605Slightly white alabastrum(tetraploid) 229.357
CNS0095606Slightly white alabastrum(tetraploid) 350.448
CNS0095607Whole white alabastrum(tetraploid) 121.648
CNS0095608Whole white alabastrum(tetraploid) 222.183
CNS0095609Whole white alabastrum(tetraploid) 334.386
CNS0095610Silvery flower (tetraploid) 137.009
CNS0095611Silvery flower (tetraploid) 237.469
CNS0095612Silvery flower (tetraploid) 324.860
CNS0095613Golden flower (tetraploid) 127.960
CNS0095614Golden flower (tetraploid) 232.735
CNS0095615Golden flower (tetraploid) 326.263
CRA001975CRR073297Stem 129.476
CRR073298Stem 229.845
CRR073299Stem 333.569
CRR073300Leaf 131.272
CRR073301Leaf 231.781
CRR073302Leaf 336.568
CRR073303Juvenile bud 127.114
CRR073304Juvenile bud 229.668
CRR073305Juvenile bud 342.269
CRR073306Third green 119.098
CRR073307Third green 219.476
CRR073308Third green 318.544
CRR073309Second white 125.768
CRR073310Second white 216.325
CRR073311Second white 321.180
CRR073312Silver flowering 123.433
CRR073313Silver flowering 220.022
CRR073314Silver flowering 316.197
CRR073315Gold flowering 122.759
CRR073316Gold flowering 219.874
CRR073317Gold flowering 327.738
CRR073318Tawny withering 140.881
CRR073319Tawny withering 229.065
CRR073320Tawny withering 337.802