Detail information of GWHGAAZE031630


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006587188.11.58364E-10PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit-like isoform X2 [Glycine max]
Swissprottr|O04860|PP2A5_TOBAC2E-12Serine/threonine-protein phosphatase PP2A-5 catalytic subunit
trEMBLtr|F4IN36|F4IN36_ARATH9E-11Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}
TAIR10AT3G58500.10.000001protein phosphatase 2A-4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6195354861953897-
GWHAAZE00000009mRNA6195354861953897-
GWHAAZE00000009exon6195354861953691-
GWHAAZE00000009exon6195383861953897-
GWHAAZE00000009CDS6195383861953897-
GWHAAZE00000009CDS6195354861953691-
Transcript Sequence

Network for GWHGAAZE031630

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04382PPP2C mRNA surveillance pathway map03015
MAPK signaling pathway - flymap04013
TGF-beta signaling pathwaymap04350
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728
Long-term depressionmap04730

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.024
SRR3591706second leaf5.016
SRR3591707mature leaf3.146
SRR3591708Shoot apex3.349
SRR3591709Stem8.119
SRR3591710White floral bud5.929
SRR3591711White flower5.376
SRR3591712Green floral bud4.747
SRR3591713Yellow flower2.237
SRP173429 SRR8316895Juvenile bud stage 6.480
SRR8316896Juvenile bud stage 6.109
SRR8316897Juvenile bud stage 2.382
SRR8316894Third green stage 5.779
SRR8316900Third green stage 8.179
SRR8316901Third green stage 7.914
SRR8316898Complete white stage 4.462
SRR8316899Complete white stage 7.754
SRR8316903Complete white stage 10.520
SRR8316902Silver flowering stage3.767
SRR8316904Silver flowering stage6.015
SRR8316905Silver flowering stage1.945
SRR8316906Gold flowering stage 6.847
SRR8316907Gold flowering stage 5.362
SRR8316908Gold flowering stage 5.285
SRP132670SRR6706286Control0.755
SRR6706287Light intensity 50%0.980
SRR6706288Light intensity 20%1.086
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.838
CNS0095593Slightly white alabastrum(diploid) 21.834
CNS0095594Slightly white alabastrum(diploid) 31.843
CNS0095595Whole white alabastrum(diploid) 21.690
CNS0095596Whole white alabastrum(diploid) 31.255
CNS0095597Whole white alabastrum(diploid) 41.893
CNS0095598Silvery flower (diploied) 13.164
CNS0095599Silvery flower (diploied) 22.575
CNS0095600Silvery flower (diploied) 36.181
CNS0095601Golden flower (diploid) 13.554
CNS0095602Golden flower (diploid) 24.050
CNS0095603Golden flower (diploid) 32.710
CNS0095604Slightly white alabastrum(tetraploid) 13.913
CNS0095605Slightly white alabastrum(tetraploid) 22.502
CNS0095606Slightly white alabastrum(tetraploid) 36.940
CNS0095607Whole white alabastrum(tetraploid) 14.851
CNS0095608Whole white alabastrum(tetraploid) 24.169
CNS0095609Whole white alabastrum(tetraploid) 35.126
CNS0095610Silvery flower (tetraploid) 13.793
CNS0095611Silvery flower (tetraploid) 23.826
CNS0095612Silvery flower (tetraploid) 34.008
CNS0095613Golden flower (tetraploid) 11.770
CNS0095614Golden flower (tetraploid) 25.507
CNS0095615Golden flower (tetraploid) 31.860
CRA001975CRR073297Stem 11.265
CRR073298Stem 21.386
CRR073299Stem 30.000
CRR073300Leaf 12.114
CRR073301Leaf 20.633
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.299
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.019
CRR073306Third green 10.006
CRR073307Third green 20.000
CRR073308Third green 30.097
CRR073309Second white 10.000
CRR073310Second white 20.213
CRR073311Second white 30.209
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.063
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.919
CRR073319Tawny withering 20.527
CRR073320Tawny withering 33.351