Gene detail

Detail information of GWHGAAZE031599

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09315.1	4.5521E-171	unnamed protein product [Coffea canephora]
COG	YP_004457704.1	3E-18	DNA replication factor C, small subunit
Swissprot	tr\|Q8VXX4\|RFC3_ARATH	1E-49	Replication factor C subunit 3
trEMBL	tr\|A0A068ULA5\|A0A068ULA5_COFCA	2E-171	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09315.1}
TAIR10	AT5G27740.1	5E-45	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61471992	61484610	-
GWHAAZE00000009	mRNA	61471992	61484610	-
GWHAAZE00000009	exon	61484420	61484610	-
GWHAAZE00000009	exon	61483247	61484339	-
GWHAAZE00000009	exon	61482972	61483082	-
GWHAAZE00000009	exon	61482832	61482864	-
GWHAAZE00000009	exon	61473577	61473748	-
GWHAAZE00000009	exon	61472865	61473043	-
GWHAAZE00000009	exon	61472444	61472580	-
GWHAAZE00000009	exon	61472212	61472307	-
GWHAAZE00000009	exon	61471992	61472121	-
GWHAAZE00000009	CDS	61484420	61484610	-
GWHAAZE00000009	CDS	61483247	61484339	-
GWHAAZE00000009	CDS	61482972	61483082	-
GWHAAZE00000009	CDS	61482832	61482864	-
GWHAAZE00000009	CDS	61473577	61473748	-
GWHAAZE00000009	CDS	61472865	61473043	-
GWHAAZE00000009	CDS	61472444	61472580	-
GWHAAZE00000009	CDS	61472212	61472307	-
GWHAAZE00000009	CDS	61471992	61472121	-

Transcript Sequence
>GWHTAAZE031635 ATGTCGAGTCCGTCGATTCATCATTCCTCACCCGTCCCCAACTTCCCCGATCCTCCTCACTCTAAACCTCACTCTGGCCGGCGGGCGACCTCCCCCGAAGTTTGGCCGTTGAAAGATGACAAGTTTATAGTGATAAACGCATCGAATTCAACCAAACAACATCCGTCGGATGCGATTCTAGAGGAGAAAAGAGACGAGTTCGGAAGAGATTCGGATCCGCCAATCCCGCGTTCTCTGTCTGAACCTGACGTAACCAAAACTCTTCAGTCTCATGGTCCTATCGACAACTCTTCACAAGCCACCTCTCCGCGTATCTCTTGGCACAAGAAAGTCGGGAACATAATAAGAAGGACTAGTTTAGATCTAACGCATGAAAATTTAGAGGAAATTAACAAGAAAAGTCCGACAAATCTGATCACCGATGATAAAAGGAATTTTACTTGTAGTCCTTACTACAAAGGGCTTACTGACTTCACCCTCGTTATCAACAAGGAAAGACATCAAGTGGAATCGAGTCCTGGAAGAGCGCGGAGTCCACCAATCCGAAGGTCCATGTCTGATCCCGACATCTTGGATACTCATCACTCTGATCTACCTTCACGACTTGCCACCTCACCGGAAACTTCATGGCTCAAAAAAGCTAACTCAACAAGAAAGAACTCAGAATTATTAACACAAGAAAGGCTCGAGGAGCTCAATACGAAAAATGAGATCCGAGAGGATAAAAGGTACTCTACTAGTAGCCCTTACTATAAAGGGCTAACGGACTTCTCTCTCGCAATCAACCGAGACAGGACTCCTCCCTTGCCGTTGAGTCCTGAGAGAGAGAGCCAAGCGGCTAGTTCAACTAGCTCAAGCTCAAGATCAAGCTTCGTTGTCAAGATGCAAGAATGGAGCGCTGCTTGCTTTATTGTTAGACGGCCCCACCTTGAACATTCGGCTCCAACTTCTTTCTCACCGGCAAAAACACGGGCAAGAACAAGAGAAATATCTAAAGAGAGTACACATTTAGGGAAAGAAGATGCTAATAGGGCTGTTATGGAAGATGACAGTACCGAAATATCAAACAAAGGGAAGCCATTGAGGGAGAGAGTTTCATTTTCATCAGCACGGCCACCACTATCGCCACCACGAATATTGCCTACCAAAAAGGTTGTGCTAAACGCAAAGGAAATAAGTGAAACAGAAAACGAAAGAAAAGTTTTCTGGGCAGACAAGTATCGGCCCGATGCTTTAAAAGATTTTATCTGCAACCGAAATAAAGCAATTGAACTGCAGAATCTGGCAAAAGCAGAGGATTGCTGTCATTTCATATTTGAAGGACTTCCAGGGGTGGGAAAGAGAACTATGATTTGGGCTTTGCTTCGTGAAGCTTTCGGAGCGGACAAAGTAGAGGCAAGAGAAAAATGCAAGCAATTTGACTTGAAGGGGGAAGCAGTAAGCAGTATACAAGTAAATGTGAAGGAATCATCACAACACGTAGAAGTTAATCTCTCGGAACTAAAAGGGTATGAGAAGCATGTAATAGTAGAACTCATCAAAGAGACAAATAACAGGTTAACCAACAATGCTTTGAAGTGCAGCTACGATAACTGCAGAGCTATAATTCTCTACGAGGCAGACAAGCTATCTACAGACGCCCTACTTTATATAAGGTGGCTATTAGAGAGATATAAAGGGTTTAATATGGTCTTCTTTTGCTGCAATGACATCTCAAGGCTTCAGCCAATTAAGTCGCTTTGCACTGTAATTCAACTTCTTCCACCTTCTAATGAAGAGATTGTTGAAGTGTTGGAATTCATAGCAAAACAAGAAGGTATAAAATTGCCACGCCAGTTGGCTGAGAAAATCACAAACAACTCGAAGAATAATTTACGACAAGCCATACGTTCCTTTGAAGCTACCTGGCAATCCAACCCCACCTTGAAGGAAGATCAAGAAATCTTGACCGGTTGGGAAGATGATATTGCAAAAATTGCCAAAAATGTAGTAGAAGAGCAAAGCCCGAAACAGCTATATAACATCCGTGGGAAACTTCAAAAACTAATAGAGCACAATGTATCCCCTGAGTTCATTTTCCAAGTAAGGAGTTCTGTTTATCATGCATCTACTGTTTTGCATGTGGTACATCCGAGCCAATAG

Network for GWHGAAZE031599

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10756	RFC3_5	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.413
	SRR3591706	second leaf	1.950
	SRR3591707	mature leaf	0.534
	SRR3591708	Shoot apex	1.485
	SRR3591709	Stem	1.765
	SRR3591710	White floral bud	0.236
	SRR3591711	White flower	0.388
	SRR3591712	Green floral bud	0.295
	SRR3591713	Yellow flower	1.140
SRP173429	SRR8316895	Juvenile bud stage	0.393
	SRR8316896	Juvenile bud stage	0.374
	SRR8316897	Juvenile bud stage	0.161
	SRR8316894	Third green stage	0.223
	SRR8316900	Third green stage	0.506
	SRR8316901	Third green stage	0.433
	SRR8316898	Complete white stage	0.041
	SRR8316899	Complete white stage	0.294
	SRR8316903	Complete white stage	0.255
	SRR8316902	Silver flowering stage	0.097
	SRR8316904	Silver flowering stage	0.293
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.472
	SRR8316907	Gold flowering stage	0.348
	SRR8316908	Gold flowering stage	0.232
SRP132670	SRR6706286	Control	0.118
	SRR6706287	Light intensity 50%	0.086
	SRR6706288	Light intensity 20%	0.092
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.594
	CNS0095593	Slightly white alabastrum(diploid) 2	0.417
	CNS0095594	Slightly white alabastrum(diploid) 3	0.370
	CNS0095595	Whole white alabastrum(diploid) 2	0.273
	CNS0095596	Whole white alabastrum(diploid) 3	0.292
	CNS0095597	Whole white alabastrum(diploid) 4	0.184
	CNS0095598	Silvery flower (diploied) 1	0.472
	CNS0095599	Silvery flower (diploied) 2	0.273
	CNS0095600	Silvery flower (diploied) 3	0.435
	CNS0095601	Golden flower (diploid) 1	0.081
	CNS0095602	Golden flower (diploid) 2	0.658
	CNS0095603	Golden flower (diploid) 3	0.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.231
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.596
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.185
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.155
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.197
	CNS0095610	Silvery flower (tetraploid) 1	0.537
	CNS0095611	Silvery flower (tetraploid) 2	0.367
	CNS0095612	Silvery flower (tetraploid) 3	0.587
	CNS0095613	Golden flower (tetraploid) 1	0.402
	CNS0095614	Golden flower (tetraploid) 2	0.475
	CNS0095615	Golden flower (tetraploid) 3	0.183
CRA001975	CRR073297	Stem 1	0.661
	CRR073298	Stem 2	0.499
	CRR073299	Stem 3	0.218
	CRR073300	Leaf 1	0.173
	CRR073301	Leaf 2	0.249
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.090
	CRR073309	Second white 1	0.060
	CRR073310	Second white 2	0.128
	CRR073311	Second white 3	0.071
	CRR073312	Silver flowering 1	0.049
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.012
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.889
	CRR073319	Tawny withering 2	0.150
	CRR073320	Tawny withering 3	0.745