Detail information of GWHGAAZE031598


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006445524.10hypothetical protein CICLE_v10019144mg [Citrus clementina]
Swissprottr|Q9SFU0|SC24A_ARATH0.000001Protein transport protein Sec24-like At3g07100
trEMBLtr|V4VZ40|V4VZ40_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR58764.1}
TAIR10AT2G21630.19E-134Sec23/Sec24 protein transport family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6145287261469323+
GWHAAZE00000009mRNA6145287261469323+
GWHAAZE00000009exon6145287261453096+
GWHAAZE00000009exon6145402561454378+
GWHAAZE00000009exon6145445861454514+
GWHAAZE00000009exon6145583961456012+
GWHAAZE00000009exon6145683961456998+
GWHAAZE00000009exon6145730561457355+
GWHAAZE00000009exon6145747761457558+
GWHAAZE00000009exon6145767061457741+
GWHAAZE00000009exon6145843061458505+
GWHAAZE00000009exon6146641361466490+
GWHAAZE00000009exon6146664561466806+
GWHAAZE00000009exon6146747161467730+
GWHAAZE00000009exon6146850861468616+
GWHAAZE00000009exon6146878761468891+
GWHAAZE00000009exon6146918061469323+
GWHAAZE00000009CDS6145287261453096+
GWHAAZE00000009CDS6145402561454378+
GWHAAZE00000009CDS6145445861454514+
GWHAAZE00000009CDS6145583961456012+
GWHAAZE00000009CDS6145683961456998+
GWHAAZE00000009CDS6145730561457355+
GWHAAZE00000009CDS6145747761457558+
GWHAAZE00000009CDS6145767061457741+
GWHAAZE00000009CDS6145843061458505+
GWHAAZE00000009CDS6146641361466490+
GWHAAZE00000009CDS6146664561466806+
GWHAAZE00000009CDS6146747161467730+
GWHAAZE00000009CDS6146850861468616+
GWHAAZE00000009CDS6146878761468891+
GWHAAZE00000009CDS6146918061469323+
Transcript Sequence

Network for GWHGAAZE031598

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04810.16zf-Sec23_Sec2454911.80E-13
PF04811.16Sec23_trunk1213568.00E-52
PF04815.16Sec23_helical4245224.30E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14006SEC23 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
GO:0030127cellular_componentCOPII vesicle coat
GO:0008270molecular_functionzinc ion binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE031598.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30123456789101112Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.618
SRR3591706second leaf4.009
SRR3591707mature leaf4.274
SRR3591708Shoot apex4.782
SRR3591709Stem5.015
SRR3591710White floral bud5.700
SRR3591711White flower6.649
SRR3591712Green floral bud6.408
SRR3591713Yellow flower8.730
SRP173429 SRR8316895Juvenile bud stage 3.321
SRR8316896Juvenile bud stage 5.989
SRR8316897Juvenile bud stage 1.459
SRR8316894Third green stage 2.732
SRR8316900Third green stage 5.208
SRR8316901Third green stage 5.421
SRR8316898Complete white stage 1.872
SRR8316899Complete white stage 4.467
SRR8316903Complete white stage 5.264
SRR8316902Silver flowering stage1.877
SRR8316904Silver flowering stage2.294
SRR8316905Silver flowering stage1.333
SRR8316906Gold flowering stage 4.491
SRR8316907Gold flowering stage 5.232
SRR8316908Gold flowering stage 3.903
SRP132670SRR6706286Control2.983
SRR6706287Light intensity 50%3.649
SRR6706288Light intensity 20%3.396
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.459
CNS0095593Slightly white alabastrum(diploid) 23.365
CNS0095594Slightly white alabastrum(diploid) 32.978
CNS0095595Whole white alabastrum(diploid) 23.021
CNS0095596Whole white alabastrum(diploid) 33.157
CNS0095597Whole white alabastrum(diploid) 43.134
CNS0095598Silvery flower (diploied) 13.485
CNS0095599Silvery flower (diploied) 23.091
CNS0095600Silvery flower (diploied) 34.695
CNS0095601Golden flower (diploid) 12.833
CNS0095602Golden flower (diploid) 24.637
CNS0095603Golden flower (diploid) 34.853
CNS0095604Slightly white alabastrum(tetraploid) 13.377
CNS0095605Slightly white alabastrum(tetraploid) 22.092
CNS0095606Slightly white alabastrum(tetraploid) 35.977
CNS0095607Whole white alabastrum(tetraploid) 12.601
CNS0095608Whole white alabastrum(tetraploid) 22.458
CNS0095609Whole white alabastrum(tetraploid) 34.003
CNS0095610Silvery flower (tetraploid) 16.417
CNS0095611Silvery flower (tetraploid) 24.446
CNS0095612Silvery flower (tetraploid) 36.306
CNS0095613Golden flower (tetraploid) 12.696
CNS0095614Golden flower (tetraploid) 25.709
CNS0095615Golden flower (tetraploid) 33.765
CRA001975CRR073297Stem 15.905
CRR073298Stem 25.729
CRR073299Stem 34.788
CRR073300Leaf 15.248
CRR073301Leaf 25.460
CRR073302Leaf 33.928
CRR073303Juvenile bud 13.564
CRR073304Juvenile bud 22.748
CRR073305Juvenile bud 34.781
CRR073306Third green 15.247
CRR073307Third green 22.690
CRR073308Third green 33.982
CRR073309Second white 17.857
CRR073310Second white 28.919
CRR073311Second white 311.053
CRR073312Silver flowering 19.354
CRR073313Silver flowering 29.667
CRR073314Silver flowering 37.717
CRR073315Gold flowering 12.064
CRR073316Gold flowering 22.845
CRR073317Gold flowering 32.182
CRR073318Tawny withering 14.031
CRR073319Tawny withering 22.844
CRR073320Tawny withering 33.080