Gene detail

Detail information of GWHGAAZE031584

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007040828.1	8.13493E-62	ATPase family associated with various cellular activities, putative isoform 1 [Theobroma cacao]
COG	NP_342275.1	0.0000001	replication factor C small subunit
Swissprot	tr\|Q852K3\|RFC5_ORYSJ	1E-16	Replication factor C subunit 5
trEMBL	tr\|A0A061GE61\|A0A061GE61_THECC	3E-62	ATPase family associated with various cellular activities, putative isoform 1 {ECO:0000313\|EMBL:EOY25329.1}
TAIR10	AT5G27740.1	8E-15	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61217185	61227351	-
GWHAAZE00000009	mRNA	61217185	61227351	-
GWHAAZE00000009	exon	61217185	61217410	-
GWHAAZE00000009	exon	61226447	61226479	-
GWHAAZE00000009	exon	61226586	61226696	-
GWHAAZE00000009	exon	61226859	61227351	-
GWHAAZE00000009	five_prime_UTR	61227105	61227351	-
GWHAAZE00000009	CDS	61226859	61227104	-
GWHAAZE00000009	CDS	61226586	61226696	-
GWHAAZE00000009	CDS	61226447	61226479	-
GWHAAZE00000009	CDS	61217228	61217410	-
GWHAAZE00000009	three_prime_UTR	61217185	61217227	-

Transcript Sequence
>GWHTAAZE031620 AGACAGGACTCCTCCCTTGCCGTTGAGTCCTGAGAGAGAGCCAAGCGGCTAGTTCAACTAGCTCAAGCTCAAGATCAAGCTTCGTTGTCAAGATGCAAGAATGGAGCGCTGCTTGCTTTATTGTTAGACGGCCCCACCTTGAACATTCGGCTCCAACTTCTTTCTCACCGGCAAAACACGGGCAAGAACAAGAGAAATATCTAAAGAGAGTACACATTTAGGGAAAGAAGATGCTAATAGGGCTGTTATGGAAGATGACAGTACCGAAATATCAAACAAAGGGAAGCCATTGAGGGAGAGAGTTTCATTTTCATCAGCACGGCCACCACTATCGCCACCACGAATATTGCCTACCAAAAAGGTTGTGCTAAACGCAAAGGAAATAAGTGAAACAGAAAACGAAAGAAAAGTTTTCTGGGCAGACAAGTATCGGCCCGATGCTTTAAAAGATTTTATCTGCAACCGAAATAAGGCAATTGAGCTGCAGAATCTGGCAAAAGCAGAGGATTGCTGTCATTTCATATTTGAAGGACTTCCAGGGGTGGGAAAGAGAACTATGATTTGGGCTTTGCTTCGTGAAGCTTTCGGAGCGGACAAAGTAGAGGCAAGAGAAAAATGCAAGCAATTTGACTTGAAGGGGGAAGCAGTAAGCAGTATACAAGTAAATGTGAAGGAATCATCACAACACGTAGAAGTTAATCTCTCGGAACTGAAAGGGTATGAGAAGCATGTAATAGTAGAACTCATCAAAGAGACAAATAACAGGTTAACCAACAATGCTTTGAAGTGCAGCTACGATAACTGCAGAGGTATCATTTAATTGTTCCTAAGAAAAACAAGTATTCTATGTTGTTAGGGTCTTC

Network for GWHGAAZE031584

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10756	RFC3_5	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.425
	SRR3591706	second leaf	0.852
	SRR3591707	mature leaf	0.185
	SRR3591708	Shoot apex	0.843
	SRR3591709	Stem	0.471
	SRR3591710	White floral bud	0.024
	SRR3591711	White flower	0.043
	SRR3591712	Green floral bud	0.047
	SRR3591713	Yellow flower	0.534
SRP173429	SRR8316895	Juvenile bud stage	0.328
	SRR8316896	Juvenile bud stage	0.278
	SRR8316897	Juvenile bud stage	0.368
	SRR8316894	Third green stage	0.201
	SRR8316900	Third green stage	0.139
	SRR8316901	Third green stage	0.158
	SRR8316898	Complete white stage	0.153
	SRR8316899	Complete white stage	0.033
	SRR8316903	Complete white stage	0.313
	SRR8316902	Silver flowering stage	0.029
	SRR8316904	Silver flowering stage	0.002
	SRR8316905	Silver flowering stage	0.092
	SRR8316906	Gold flowering stage	0.363
	SRR8316907	Gold flowering stage	0.406
	SRR8316908	Gold flowering stage	0.862
SRP132670	SRR6706286	Control	0.011
	SRR6706287	Light intensity 50%	0.055
	SRR6706288	Light intensity 20%	0.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.308
	CNS0095593	Slightly white alabastrum(diploid) 2	0.134
	CNS0095594	Slightly white alabastrum(diploid) 3	0.414
	CNS0095595	Whole white alabastrum(diploid) 2	0.437
	CNS0095596	Whole white alabastrum(diploid) 3	0.290
	CNS0095597	Whole white alabastrum(diploid) 4	0.505
	CNS0095598	Silvery flower (diploied) 1	0.093
	CNS0095599	Silvery flower (diploied) 2	0.114
	CNS0095600	Silvery flower (diploied) 3	0.371
	CNS0095601	Golden flower (diploid) 1	0.192
	CNS0095602	Golden flower (diploid) 2	0.336
	CNS0095603	Golden flower (diploid) 3	0.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.632
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.254
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.543
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.328
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.578
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.187
	CNS0095610	Silvery flower (tetraploid) 1	0.421
	CNS0095611	Silvery flower (tetraploid) 2	0.451
	CNS0095612	Silvery flower (tetraploid) 3	0.561
	CNS0095613	Golden flower (tetraploid) 1	0.498
	CNS0095614	Golden flower (tetraploid) 2	0.724
	CNS0095615	Golden flower (tetraploid) 3	0.461
CRA001975	CRR073297	Stem 1	0.789
	CRR073298	Stem 2	0.375
	CRR073299	Stem 3	0.089
	CRR073300	Leaf 1	0.171
	CRR073301	Leaf 2	0.026
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.110
	CRR073309	Second white 1	0.167
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.442
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.009