Gene detail

Detail information of GWHGAAZE031581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008232223.1	0	PREDICTED: protein transport protein SEC23 [Prunus mume]
Swissprot	tr\|Q9SFU0\|SC24A_ARATH	0.00000001	Protein transport protein Sec24-like At3g07100
trEMBL	tr\|K4AXZ9\|K4AXZ9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g081070.2.1}
TAIR10	AT2G21630.1	0	Sec23/Sec24 protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61201585	61212847	+
GWHAAZE00000009	mRNA	61201585	61212847	+
GWHAAZE00000009	exon	61201585	61201809	+
GWHAAZE00000009	exon	61202744	61203241	+
GWHAAZE00000009	exon	61204579	61204752	+
GWHAAZE00000009	exon	61205581	61205742	+
GWHAAZE00000009	exon	61206268	61206299	+
GWHAAZE00000009	exon	61207171	61207246	+
GWHAAZE00000009	exon	61207771	61207946	+
GWHAAZE00000009	exon	61208053	61208140	+
GWHAAZE00000009	exon	61209932	61210009	+
GWHAAZE00000009	exon	61210164	61210325	+
GWHAAZE00000009	exon	61210990	61211253	+
GWHAAZE00000009	exon	61212310	61212414	+
GWHAAZE00000009	exon	61212704	61212847	+
GWHAAZE00000009	CDS	61201585	61201809	+
GWHAAZE00000009	CDS	61202744	61203241	+
GWHAAZE00000009	CDS	61204579	61204752	+
GWHAAZE00000009	CDS	61205581	61205742	+
GWHAAZE00000009	CDS	61206268	61206299	+
GWHAAZE00000009	CDS	61207171	61207246	+
GWHAAZE00000009	CDS	61207771	61207946	+
GWHAAZE00000009	CDS	61208053	61208140	+
GWHAAZE00000009	CDS	61209932	61210009	+
GWHAAZE00000009	CDS	61210164	61210325	+
GWHAAZE00000009	CDS	61210990	61211253	+
GWHAAZE00000009	CDS	61212310	61212414	+
GWHAAZE00000009	CDS	61212704	61212847	+

Transcript Sequence
>GWHTAAZE031617 ATGACGGAATTCCTGGACCTAGAATCCCAAGACGCCGTTCGAATGCCGTGGAACGTCTTGCCGGGGACAAAACAAGAAGCGGCTCAATCAATAATACCAATCTCCGCCATTTACACACCACTCAAGCCCTTCCCTAATATGCCTGTCCTCCCTTACTCCCCTCTCCGTTGCCGTAATTGCCGATCCGTCCTCAATCCCTTCGCCATCATCGATTACTCCACCAAGGTATGGATCTGCTCCTTCTGCCTCCACCGGAACCACTTCCCCCCTCACTACCATTCGATCTCTGACGACAATCTCCCCGCCGAGCTCTTCCCACAGTACACCACTATCGAATACGAATCCGCCACTGAGAAATCTACAGTTCCGCCGGTTTTCATGTTTGTGATCGATACTTGTATGATCGAGGAAGAGATTGGTTACTTGAAATCAGCCTTGTCTAGGGCTGTGGGGATGGTGCCGGAGAATTCGCTTGTTGGATTGATTACATTTGGTACTTATGCGTGTGTTCATGAATTGGGGTTTGGGCAAATTCCAAAGGTTTATGTTTTTAAGGGGTCAAAGGAGGTGACCAAGGATCAGGTGTTGGAGCAGATGGGTTTTTTCGCGAAGAAGCCTAAGCCGAGTACTGGGGTGATTGCTGGGGTTAGGGATGGGCTTTCACAGGATAGCATTGCAAGATTCTTGTTGCCGGCTTCTGAGTGTGAGTTTGCACTCAATTCGGTATTGGAGGAGCTTCAAAAAGATCCCTGGCCCATTCAAGCAGATCAAAGGGCAGCAAGGTGCACTGGCACAGCATTGAGTGTGGCTGCTCATTTGTTAGGAGTGTGTGTTCCAGGTTCCGGGGCACGAATTATGGCATTTTTGGGTGGGCCATCAACGGAAGGGCCGGGCTCTATTGTGTCTAAAAATTTGTCTGAACCTATACGTTCTCACAAGGACCTGGATAAAGATTCTGTTCCCTATTATCATAAAGCTGTGAAGTTCTACGAAGGTCTTTCAAAGCAGCTTGTACATCAAGGACATGTACTTGATGTTTTTGCTTGTGCTCTTGACCAGTCTGGTGACTTTGACCTTGGTCTATCATCAAATGGTATATTTGAGGTTAACTGCTCAAAGGATATCAAAATTCAAGGCATTATCGGTCCTTGTGCATCACTTGACAAGAAAGGTCCTTTGTGCTCTGAAACTGTAATTGGTCAAGGGGGTACCACCGCTTGGAAGATGTGTGGCCTTGACAAAGCTACATCTTTATGTTTGATATTCGAAATGGTGAAGAAGGAAACCCCAGATGTTATTGGTCAAGCTGCAAATAATCAAATTTACTTCCAATTTTTAACTTATTATCAGCATAGCAGTGGACAAATGAGACTCCGTGCTACTACTCTTTCCAGAAGATGGGTCGCTGGACCTGGAAGCATACAGGCAAGAGACCTAATTGCTGGATTTGACCAAGAAGCAGCTGCTGTAGTCACAGCACGGCAAGTTTCATTCAAAATGGAAACTGAGGCTGAATTCGATCCGATAAGATGGCTGGATAAATCTTTAATACATATTTGTTCTCGGTTTGGCGACTACCAGAAGGACAGTCCATCTTCTTTTAGCTTATCTCCACGGTTTTCAATAGTTCCTCAGTTCATATTCCACTTACGCCGTTCTCAGTTTGTCCAGGTCTTCAATAACAGCCCAGATGAGACGGCTTACTTTAGGATGATATTGAACAGGGAAAATGTGGCTAATTCAGTAGTCATGGTTCAGCCCTCATTGATCTCTTACTCTTTTCATTCTGGACCGGAACCAGCTCTCCTTGATGTGGCTGCCATTGCTGCTGATAGGATCCTTCTTTTGGATTCTTATTTCACCGTTGTGGTATTTCATGGGTCAACCATCGCTCAGTGGCGCAAAGCTGGGTACCACGATCAACCTGAACATGAGGTATTTGCCCAGTTGCTGCGAGCTCCTCGAGATGATGCTGATGCAATAATTAAGGAAAGATTTCCAGTACCTCGCTTAGTAATTTGTGATCAGCATGGATCCCAGGCTCGTTTTCTGCTGGCAAAACTAAATCCTTCTGCCACATACAACTCTGATGCTCCTCTTGTTCCTGGAGGGGATGTCCTCTTTACAGATGATGTGAGCTTCGAGGTGTTCTTGGATCATCTTCAACGGTTGGCTGTTCAATAG

Network for GWHGAAZE031581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04810.16	zf-Sec23_Sec24	54	92	9.30E-17
PF04811.16	Sec23_trunk	122	355	3.50E-54
PF08033.13	Sec23_BS	364	468	6.30E-28
PF04815.16	Sec23_helical	484	582	4.50E-23
PF00626.23	Gelsolin	598	684	1.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14006	SEC23	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0090114	biological_process	COPII-coated vesicle budding
GO:0006886	biological_process	intracellular protein transport
GO:0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0030127	cellular_component	COPII vesicle coat
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.037
	SRR3591706	second leaf	10.206
	SRR3591707	mature leaf	10.518
	SRR3591708	Shoot apex	11.719
	SRR3591709	Stem	13.085
	SRR3591710	White floral bud	13.417
	SRR3591711	White flower	16.157
	SRR3591712	Green floral bud	16.812
	SRR3591713	Yellow flower	23.241
SRP173429	SRR8316895	Juvenile bud stage	8.656
	SRR8316896	Juvenile bud stage	14.145
	SRR8316897	Juvenile bud stage	7.608
	SRR8316894	Third green stage	5.142
	SRR8316900	Third green stage	12.378
	SRR8316901	Third green stage	15.083
	SRR8316898	Complete white stage	4.050
	SRR8316899	Complete white stage	10.784
	SRR8316903	Complete white stage	10.592
	SRR8316902	Silver flowering stage	5.167
	SRR8316904	Silver flowering stage	7.091
	SRR8316905	Silver flowering stage	3.864
	SRR8316906	Gold flowering stage	18.377
	SRR8316907	Gold flowering stage	15.153
	SRR8316908	Gold flowering stage	20.208
SRP132670	SRR6706286	Control	14.041
	SRR6706287	Light intensity 50%	13.747
	SRR6706288	Light intensity 20%	13.607
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.653
	CNS0095593	Slightly white alabastrum(diploid) 2	7.578
	CNS0095594	Slightly white alabastrum(diploid) 3	7.916
	CNS0095595	Whole white alabastrum(diploid) 2	7.560
	CNS0095596	Whole white alabastrum(diploid) 3	5.737
	CNS0095597	Whole white alabastrum(diploid) 4	6.926
	CNS0095598	Silvery flower (diploied) 1	8.474
	CNS0095599	Silvery flower (diploied) 2	5.906
	CNS0095600	Silvery flower (diploied) 3	12.299
	CNS0095601	Golden flower (diploid) 1	6.472
	CNS0095602	Golden flower (diploid) 2	14.860
	CNS0095603	Golden flower (diploid) 3	12.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.641
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.102
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.170
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.855
	CNS0095610	Silvery flower (tetraploid) 1	19.069
	CNS0095611	Silvery flower (tetraploid) 2	17.519
	CNS0095612	Silvery flower (tetraploid) 3	27.303
	CNS0095613	Golden flower (tetraploid) 1	12.302
	CNS0095614	Golden flower (tetraploid) 2	18.478
	CNS0095615	Golden flower (tetraploid) 3	17.914
CRA001975	CRR073297	Stem 1	14.590
	CRR073298	Stem 2	13.521
	CRR073299	Stem 3	11.106
	CRR073300	Leaf 1	15.221
	CRR073301	Leaf 2	15.281
	CRR073302	Leaf 3	10.951
	CRR073303	Juvenile bud 1	9.774
	CRR073304	Juvenile bud 2	7.780
	CRR073305	Juvenile bud 3	13.206
	CRR073306	Third green 1	14.792
	CRR073307	Third green 2	8.824
	CRR073308	Third green 3	11.212
	CRR073309	Second white 1	26.348
	CRR073310	Second white 2	25.295
	CRR073311	Second white 3	29.570
	CRR073312	Silver flowering 1	26.807
	CRR073313	Silver flowering 2	29.927
	CRR073314	Silver flowering 3	26.429
	CRR073315	Gold flowering 1	6.272
	CRR073316	Gold flowering 2	8.073
	CRR073317	Gold flowering 3	4.553
	CRR073318	Tawny withering 1	11.547
	CRR073319	Tawny withering 2	6.684
	CRR073320	Tawny withering 3	8.359