Gene detail

Detail information of GWHGAAZE031576

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	1.2046E-109	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	1E-24	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID8\|Y5900_ARATH	5E-100	Putative receptor-like protein kinase At5g39000 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	4E-110	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT5G39000.1	1E-81	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61119626	61121194	-
GWHAAZE00000009	mRNA	61119626	61121194	-
GWHAAZE00000009	exon	61119626	61121194	-
GWHAAZE00000009	CDS	61119626	61121194	-

Transcript Sequence
>GWHTAAZE031612 ATGAATGTAAATATAGTAGCGGCGTGTAATGAATTATGGACAGCTGCTAAGAAGGCAATCAAAAAAGCATCCCACTTTGATGCTCCACTAAACCATCTACTCAAGACCATGCTAATGCTTTTAAAGCCGAAGGTTGATGAAATGATGAAGTTAAACGGAGAACTGAAGCTTTCAAAAACAAAGATGGAATTGTTGACATGTTTGAGAGATGGAAAAGTTCTCGTCGATAAATGCACTGCAATCAGTAAATATAGGCCCATCAACGGCTACAATCATTCAAAAAAGTTGTTGGAACTTCACGATTCTCTATTGTCTTTCTTTCAGGTCAAATATCCGTCTGACTTTAAGTTTGCCCTTCAGAGAGTTGTGGCCTCGACTAGTGAGAATCCTTTTGTTGTTCCAATTATTGTTCCCATTGTTGCCGAGAAACGAGAGTGTGTGTTAGATGCAATATCTCCCAAGAAGATAGTAGATACACATACACCACCTGCAATGACTTTGGAGGCACGCGTTAGTGCTGAGCAAGGGGATGGACCTTTAGGTCCAATCTCTGCACCACTAAATCTATGCCGCCGCTTTACATTTGTTGAGATTCAGTCCGCTACCCAAAACTTTAATGATGCATTTGTCATTGGGAAGGGCGGATTTGGAAAGGTTTATAAAGGGTTCTTTGACAATAGAGCAAACGCAGTTGCCATAAAACGTTTGGATCCCGTGTCCAACCAAGGAGACATCGAGTTCCGCACAGAAATTGAGATGCTTTCTAATTTTCGACATTGCAATCTCGTATCTCTTATTGGCTACTGCTACAATGGTCGTGAAATGATCATTGTTTATGAATATATGCTTAATGGGAGCATGGCTGATCATTTGCATCCAAAAGATGGTAGAAATGGTAATAACTCTAATTTATCTTGGGTGCAACGTTTGAAGATTTGCATAGGGGCCGCTCGTGGAATAGACTACCTACATACTGGAACGGGTGTTTCACAAAGCGTCATACACCGGGACATTAAAACCTCGAACATCCTCTTGGATGAAAATTGGGCAGCTAAGGTTTCGGACTTTGGGTTATGCAAAATAGGTCCAGTAAACCAGTCACGCACCCATGTCAGTACCCGTGTCAAAGGAACCCCAGGCTATTGGGATCCAGAGTATTGCCTGACCCATCGGTTAACGAGAAAATCTGACGTGTATTCATTCGGAGTGGTATTGTTAGAAGCGCTATCTGGGAAGCCGGCATTATTAGATTTAAGACTTCCAAAAGAACAGAGGAGTCTAGTGGCATGGGCACAACACTTCATCCAAGAAAATATACCACATAAGCTTATCGATCCCAATTTGGAGTGGGAAATCCGCCCAAGTTCTTTGGAGGCCTTTGTTGGAATTACAGCTCAGTGCTTGCAGATTGATCGAAAGAAACGACCTAAAATGGCCGATGTTGTGTTATCGCTTGAGTTGGCATTGTCAATGCAGACGAGCAAGGACTCTTCTCTACTTAACGAGGATATCTTTGATTTTGTTGAAACTCCTGATATCAATGCTCACAGCCTTCAGGTAATCCGTTGA

Network for GWHGAAZE031576

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05659.12	RPW8	6	111	6.90E-14
PF00069.26	Pkinase	210	482	9.00E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.973
	SRR3591706	second leaf	0.380
	SRR3591707	mature leaf	1.483
	SRR3591708	Shoot apex	0.359
	SRR3591709	Stem	11.353
	SRR3591710	White floral bud	3.585
	SRR3591711	White flower	11.453
	SRR3591712	Green floral bud	1.464
	SRR3591713	Yellow flower	18.769
SRP173429	SRR8316895	Juvenile bud stage	2.754
	SRR8316896	Juvenile bud stage	2.746
	SRR8316897	Juvenile bud stage	4.326
	SRR8316894	Third green stage	0.591
	SRR8316900	Third green stage	0.584
	SRR8316901	Third green stage	1.066
	SRR8316898	Complete white stage	0.725
	SRR8316899	Complete white stage	4.159
	SRR8316903	Complete white stage	0.747
	SRR8316902	Silver flowering stage	1.831
	SRR8316904	Silver flowering stage	2.125
	SRR8316905	Silver flowering stage	0.700
	SRR8316906	Gold flowering stage	5.968
	SRR8316907	Gold flowering stage	4.757
	SRR8316908	Gold flowering stage	11.099
SRP132670	SRR6706286	Control	1.572
	SRR6706287	Light intensity 50%	1.898
	SRR6706288	Light intensity 20%	0.647
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.726
	CNS0095593	Slightly white alabastrum(diploid) 2	5.602
	CNS0095594	Slightly white alabastrum(diploid) 3	4.469
	CNS0095595	Whole white alabastrum(diploid) 2	3.946
	CNS0095596	Whole white alabastrum(diploid) 3	0.496
	CNS0095597	Whole white alabastrum(diploid) 4	1.445
	CNS0095598	Silvery flower (diploied) 1	8.029
	CNS0095599	Silvery flower (diploied) 2	4.395
	CNS0095600	Silvery flower (diploied) 3	3.685
	CNS0095601	Golden flower (diploid) 1	7.692
	CNS0095602	Golden flower (diploid) 2	9.197
	CNS0095603	Golden flower (diploid) 3	9.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.171
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.202
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.361
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.236
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.337
	CNS0095610	Silvery flower (tetraploid) 1	2.361
	CNS0095611	Silvery flower (tetraploid) 2	0.179
	CNS0095612	Silvery flower (tetraploid) 3	0.802
	CNS0095613	Golden flower (tetraploid) 1	2.370
	CNS0095614	Golden flower (tetraploid) 2	4.248
	CNS0095615	Golden flower (tetraploid) 3	0.376
CRA001975	CRR073297	Stem 1	0.927
	CRR073298	Stem 2	0.799
	CRR073299	Stem 3	0.285
	CRR073300	Leaf 1	1.392
	CRR073301	Leaf 2	0.932
	CRR073302	Leaf 3	0.554
	CRR073303	Juvenile bud 1	0.122
	CRR073304	Juvenile bud 2	0.225
	CRR073305	Juvenile bud 3	0.259
	CRR073306	Third green 1	0.407
	CRR073307	Third green 2	0.034
	CRR073308	Third green 3	0.448
	CRR073309	Second white 1	0.559
	CRR073310	Second white 2	0.973
	CRR073311	Second white 3	1.561
	CRR073312	Silver flowering 1	4.858
	CRR073313	Silver flowering 2	4.633
	CRR073314	Silver flowering 3	5.057
	CRR073315	Gold flowering 1	0.450
	CRR073316	Gold flowering 2	3.954
	CRR073317	Gold flowering 3	7.607
	CRR073318	Tawny withering 1	11.977
	CRR073319	Tawny withering 2	31.132
	CRR073320	Tawny withering 3	5.285