Gene detail

Detail information of GWHGAAZE031556

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN81350.1	0	hypothetical protein VITISV_012720 [Vitis vinifera]
Swissprot	tr\|Q8S8N4\|Y2685_ARATH	0	Probably inactive receptor-like protein kinase At2g46850 (Precursor)
trEMBL	tr\|A5BPY9\|A5BPY9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81350.1}
TAIR10	AT2G46850.1	1E-154	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60922807	60926486	+
GWHAAZE00000009	mRNA	60922807	60926486	+
GWHAAZE00000009	exon	60922807	60923518	+
GWHAAZE00000009	exon	60924982	60925090	+
GWHAAZE00000009	exon	60925397	60926486	+
GWHAAZE00000009	CDS	60922807	60923518	+
GWHAAZE00000009	CDS	60924982	60925090	+
GWHAAZE00000009	CDS	60925397	60926486	+

Transcript Sequence
>GWHTAAZE031592 GACAAATGCGGCACCACCTTCACCCACATCCCATATCCCTTTCACCTCAACAACACCTCTTCACCATCATCATCATGTGTTGGTGGTGGTGGTTCAAATATTCCCGAAGCCTTTCGTTTAACCTGCATCAATTCATCTTCTCTTTTCCTCAGCATTGGGTCCCTATCCTACCAAGTTGTTGAATTCTTCCCTGATGCAGTACTAGTTGACTTCCCCAACACCACTTCCTGCCGTCAGTACAATGACTTGAAGTCTTTCGGTTTTGATGGTAATGACTATTTCGGTATCTCCGTTGATAACGTTGTCGGCTTATACGACTGCGAGGACTCTTCCTTGTGCAAATCCGACTGTGAGAAAAGCATAATGCCCGCCTGTGACGGTGCTGCTGCTGCTGGCGCTGGCGCTGGTGGTGGTGGTGGTTATCCTGCTTGCTGTTACCCCCTCTCTGATAGGAGCGTGTGGCGCGTGGGGTACGGGTTCTCTGGGTTTTCGGAGTTTGGTTGCCGGGGGTTCTCTTGTTGGGTCCCCGAGTCGGGGACGGCCGGCAAGAGAGGGGTAAAACTGGAATGGGGAATGCCCGTGAATTCAACTACCAAGTGTGCTCCAAATGCACAAGTAGTGAATGCGACAACGGTGGCTTCAGGGATGAGATGCCAGTGTCTTGATGGATTCGTCGGTGATGGTTTCGCACAGGGAACCGGATGCTTACAATCGTGTCTCAAGGATGGAAAGGAAGCATATGGCGTCAACTGTTACAAAAAGAAACATAGTAGAAAGAAAGTCCTACTTCTAACCGGTATGCTATCATCAAGAAATAAACATAAAAATCACCTTATTGCGTCCTTGTGCGTTGCAGGACTTCTCACTTCAGCTTTCTCCATGGCATCCTTGACGGTCCTTTTTTGTGTGATAAAACGGCCCACCAAGTCAGGTGCATTCAACCCCGACGGGGTCCACCGCCAAAGCACAATCTCGTCCCGCAAAGCTTGTAGGACTCGATTGTTCACTTACCATGAGCTAGAGGAAGCCACCAAGGGATTCCACGATGCTCAGAAACTTGTAGACGGTACCAAGGGAACAATTTATGGTGGAACCTTAGGGGATGGATCACACATAGCTGTACAAAAGGTGTATTGCGAGAGTGAAAGGGACCTCATTCAAGTTTTATCGCAAGTTGAGGTGCTATCTTCCGTTTCACACAGGAGTATGGCCCGCCTCCTCGGGTGCTCCATTGACTCCGGCTTCAGCCCACTGGTGGTCTACGAGTACCCAGCAAATGGTAGTACCCTTGAGGGGAATTTGCGTCAAAGCAGAGAACCAAAAAAGGGCCTTAGCTGGTATAACAGATTAAACATTGCTGCTGAAACTGCGAGCATTCTTGCATTTCTCCAGTGCGAGATTTCACCTCCCATCTCCCACCATGATCTCCAATCCGGTTGTATACTCCTAGAGGAAGACTTATCCGTCAAAATCGCAGGGTTTGGCCTACTTGGTCCTGACGGGTCCCATTTGACTAACAGGGGTAGTAGTACCAGTGATGTCTACAACATGGGGGTCGTGCTACTAGAGATGATAACAGGTTCCAGAACAGTGGACCTACCGACAATAGCATTGCAGAAAATAAGAATCGGAAAGCTAGAAGAGTTAGTTGATCCCATTTTCTACTATCACGAGAAGCCAAGCTTGTGGAGAGAGCAAATAGAGAAAGTAGCGGACCTGGCAACGAGGTGCTTGTTGTTTGGGGGAGAAGGGAAGCTTGGGATGTTAGATGTAGCTAAGGAACTGGTTCATATTACAAAAGAGAGTGGTGATGGTGCTAGTAGTAGGGGGCCTGCTCTCGAGGAAACATTTTCCAATTCAAGTCTCCTTCAGATGATATCAATGTCGCCCGATTCTATTTATGTGCCTTAG

Network for GWHGAAZE031556

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	351	496	4.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_URK-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.314
	SRR3591706	second leaf	0.898
	SRR3591707	mature leaf	0.842
	SRR3591708	Shoot apex	1.572
	SRR3591709	Stem	0.157
	SRR3591710	White floral bud	0.194
	SRR3591711	White flower	0.044
	SRR3591712	Green floral bud	0.329
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	2.893
	SRR8316896	Juvenile bud stage	2.571
	SRR8316897	Juvenile bud stage	0.139
	SRR8316894	Third green stage	1.492
	SRR8316900	Third green stage	3.868
	SRR8316901	Third green stage	3.437
	SRR8316898	Complete white stage	0.147
	SRR8316899	Complete white stage	1.625
	SRR8316903	Complete white stage	0.465
	SRR8316902	Silver flowering stage	0.778
	SRR8316904	Silver flowering stage	0.893
	SRR8316905	Silver flowering stage	0.168
	SRR8316906	Gold flowering stage	2.324
	SRR8316907	Gold flowering stage	0.919
	SRR8316908	Gold flowering stage	1.039
SRP132670	SRR6706286	Control	4.118
	SRR6706287	Light intensity 50%	4.112
	SRR6706288	Light intensity 20%	4.066
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.472
	CNS0095593	Slightly white alabastrum(diploid) 2	2.085
	CNS0095594	Slightly white alabastrum(diploid) 3	1.540
	CNS0095595	Whole white alabastrum(diploid) 2	3.253
	CNS0095596	Whole white alabastrum(diploid) 3	2.358
	CNS0095597	Whole white alabastrum(diploid) 4	1.313
	CNS0095598	Silvery flower (diploied) 1	3.412
	CNS0095599	Silvery flower (diploied) 2	2.367
	CNS0095600	Silvery flower (diploied) 3	1.335
	CNS0095601	Golden flower (diploid) 1	2.694
	CNS0095602	Golden flower (diploid) 2	1.910
	CNS0095603	Golden flower (diploid) 3	1.642
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.316
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.297
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.611
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.095
	CNS0095610	Silvery flower (tetraploid) 1	0.031
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.052
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	6.539
	CRR073298	Stem 2	6.804
	CRR073299	Stem 3	8.351
	CRR073300	Leaf 1	4.899
	CRR073301	Leaf 2	4.865
	CRR073302	Leaf 3	6.824
	CRR073303	Juvenile bud 1	2.192
	CRR073304	Juvenile bud 2	2.343
	CRR073305	Juvenile bud 3	1.745
	CRR073306	Third green 1	0.408
	CRR073307	Third green 2	0.058
	CRR073308	Third green 3	0.303
	CRR073309	Second white 1	1.297
	CRR073310	Second white 2	0.846
	CRR073311	Second white 3	0.993
	CRR073312	Silver flowering 1	4.420
	CRR073313	Silver flowering 2	4.759
	CRR073314	Silver flowering 3	2.463
	CRR073315	Gold flowering 1	12.120
	CRR073316	Gold flowering 2	10.293
	CRR073317	Gold flowering 3	12.233
	CRR073318	Tawny withering 1	0.843
	CRR073319	Tawny withering 2	1.680
	CRR073320	Tawny withering 3	1.918