Gene detail

Detail information of GWHGAAZE031552

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010661504.1	8.81045E-84	PREDICTED: transcription factor bHLH70 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q700E4\|BH067_ARATH	7E-66	Transcription factor bHLH67
trEMBL	tr\|F6I2Y8\|F6I2Y8_VITVI	3E-84	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61305.1}
TAIR10	AT4G01460.1	1E-52	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60866377	60868605	+
GWHAAZE00000009	mRNA	60866377	60868605	+
GWHAAZE00000009	exon	60866377	60866832	+
GWHAAZE00000009	exon	60867632	60868021	+
GWHAAZE00000009	exon	60868522	60868605	+
GWHAAZE00000009	CDS	60866377	60866832	+
GWHAAZE00000009	CDS	60867632	60868021	+
GWHAAZE00000009	CDS	60868522	60868605	+

Transcript Sequence
>GWHTAAZE031588 ATGTCATTTCTTCAAATGTTGCAAAGTGTGGATAACAAAAGGCCAAACTTCTTATTGCCTCCTCAAACGGACACAAATATGAATCCAATTTGGCAATTGGAGCCCGAAAGTTGCTTGACCCGGGAAGGTCCTGATACCCATTCTCCGGTAAGATCCGAAACCCAAGAGGGTCGGGGTTGGAACACACATTGGGTTTCCGCTGTGAGCTCCGGTTGCCATCAAGAACAAACATACTCGCCCGAGAAATCAACAAGTCCGGTGGAGAATGAATCTCCGGTGACGGCGGATAATGGCCGGAAAAGGAGAAAGAGGAACCGGAGTAGGGCGGTTAAGGAGAAAGAGGAGGTGGAGAATCAAAGGATGACCCACATTGCCGTTGAACGGAACAGGCGCCGGCAAATGAATGAGCATCTTAGTGCACTGCGCTCCCTCATGCCTCCTTCTTATATTCAAAGGGGGGACCAAGCATCGATAGTAGGAGGTGCAATAAACTTGGTGAAGGAACTGGAACAATTGCTTGAATCCCTACAAGACCGGAAGGGAATGAGGAAATTAGCCGAGGAGGAGGAGGGAGGCAGCGACACCACCACCACCATTGGCCCACCGCAACACGGAGATTTTACGGAGGAGAACATATATAAGAAAGAGTTGAGATCGGAGATGGAGAAAGTGCAAGTGACAGTGATACAAAACCATGTGAACTTGAAGATAAGCAATTGTGAGAGGAGGAGGCCAGGTCAGCTGGTGAAGGCAATTGTTGGGCTGGAACAATTAAGACTTACTGTTCTTCACCTCAACATCACCTCCTTTCAATCTTCATATGTTCATTACTCTTTCAGTCTTAAGATGGAAGATGATTGTAAGCTGGAATCGGCGGACGAGATAGCAGGAGCGGTTCATCAAATATTCAGTTTCATCAACGGCACCTGA

Network for GWHGAAZE031552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	119	170	6.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.318
	SRR3591706	second leaf	24.857
	SRR3591707	mature leaf	1.408
	SRR3591708	Shoot apex	25.876
	SRR3591709	Stem	0.103
	SRR3591710	White floral bud	0.608
	SRR3591711	White flower	0.437
	SRR3591712	Green floral bud	0.042
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.844
	SRR8316896	Juvenile bud stage	3.057
	SRR8316897	Juvenile bud stage	0.593
	SRR8316894	Third green stage	0.791
	SRR8316900	Third green stage	0.152
	SRR8316901	Third green stage	0.209
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.395
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.118
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	0.174
	SRR6706287	Light intensity 50%	0.194
	SRR6706288	Light intensity 20%	0.395
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.780
	CNS0095593	Slightly white alabastrum(diploid) 2	0.144
	CNS0095594	Slightly white alabastrum(diploid) 3	0.457
	CNS0095595	Whole white alabastrum(diploid) 2	0.245
	CNS0095596	Whole white alabastrum(diploid) 3	0.400
	CNS0095597	Whole white alabastrum(diploid) 4	0.081
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.154
	CNS0095600	Silvery flower (diploied) 3	0.222
	CNS0095601	Golden flower (diploid) 1	0.673
	CNS0095602	Golden flower (diploid) 2	0.591
	CNS0095603	Golden flower (diploid) 3	0.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.706
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.022
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.313
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.084
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.061
	CNS0095614	Golden flower (tetraploid) 2	0.080
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	15.805
	CRR073298	Stem 2	9.524
	CRR073299	Stem 3	15.333
	CRR073300	Leaf 1	1.195
	CRR073301	Leaf 2	1.757
	CRR073302	Leaf 3	0.523
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.886
	CRR073316	Gold flowering 2	5.001
	CRR073317	Gold flowering 3	4.851
	CRR073318	Tawny withering 1	0.155
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.090