Gene detail

Detail information of GWHGAAZE031527

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28433.1	1.9744E-136	hypothetical protein JCGZ_14204 [Jatropha curcas]
Swissprot	tr\|O49687\|MYC4_ARATH	3E-76	Transcription factor MYC4
trEMBL	tr\|A0A067K056\|A0A067K056_JATCU	7E-137	Uncharacterized protein {ECO:0000313\|EMBL:KDP28433.1}
TAIR10	AT4G00870.1	5E-50	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60346688	60347728	+
GWHAAZE00000009	mRNA	60346688	60347728	+
GWHAAZE00000009	exon	60346688	60347728	+
GWHAAZE00000009	CDS	60346688	60347728	+

Transcript Sequence
>GWHTAAZE031563 ATGAAAACATTTATCTACGGCGAAGGAGTTGCAGGCAAGACGTTTAGCTCCGGCGAGACGGTTTGGTTAAGCGGTGGGGAGAAACTAAAGTCCTACAACTGCGATAGGGCTAAAGAGGCTCAGATCTATGGGATTCAGACTCTGGTTTGTATTCCAACTCGGAATGGAGTAGTTGAATTAGGCTCAGATTCTCTAATTAAAGAGAACTGCGCTTTGATTCAAAAAGCGGAGTCGTTATTCGGAACAAATCGCATCAGTTTATCCCCAAAACTCACTAATAATAATAAATCATCCTCCTCCTCCATTCCGTATTTTGATAACTTCTCTTTTGCGGATATCGGAATAGTTGCAGGATCGCAACAACAGGACATATCTCAAGGCAAGAGACAGGAATTGTTTAGCGAAATAAGTTTTTCATATCTAGAATCGGAACATTCCGATTTTGAAGCACAAGGATTGAAGAAGACACCGAAAAAGAGGGGCCGGAAACCCTCCCTCTGCCGGGACAATCAACAGAACCACGTGGAAGCGGAGCGGCAGCGTCGGGAGAGGCTGAACCACCGGTTTTATTCCCTCCGGTCGGTGGTCCCGAACGTGTCGAAGATGGACAAGGCGTCGCTGCTTGCGGACGCAGTGTGTTACATCAACGAACTGAAGGCCAAAGTTGAGGAATGCGAATCACGTGTACATGAGAAAGAATCGAAGAAACTGAAAACCGAATCCATCGATCAGTTGGATAATCAGAGTACGACTACATCTGTGGATCAAATTAGGCCACAAAATGTGCGCGGGGTAGTACTGGAAGTGGATGTGAAAATTGTGGCGACGGATGCTATGATCAGAGTTCAGTCTGAGAATGCTAATTATCCGGCTGCTAAATTAATGGACGCGTTTAGGGAGCTGGAATTGGAGGTTCAGCATGCGAGTATTTCCAGCATTAATGATGTCATGGTGCAAGATGTTGTGATTAGGGTTGATCATGAGGGACTGAGGAGTGAAGATGGACTAAAAGCTGCTCTTCTCAAAAGATTGGACAAGTGA

Network for GWHGAAZE031527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0175	GO:0000159 protein phosphatase type 2A complex GOslim:cellular_component GO:0005634 nucleus GOslim:cellular_component Transcription factor HB-KNOX family Transcription factor HB-KNOX Ubiquitin_F-box family Ubiquitin_F-box family Transcription factor SET family Transcription factor SET

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.7	bHLH-MYC_N	2	80	3.40E-23
PF00010.27	HLH	172	218	3.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.117
	SRR3591706	second leaf	97.863
	SRR3591707	mature leaf	162.169
	SRR3591708	Shoot apex	39.376
	SRR3591709	Stem	3.366
	SRR3591710	White floral bud	37.079
	SRR3591711	White flower	20.169
	SRR3591712	Green floral bud	5.216
	SRR3591713	Yellow flower	8.366
SRP173429	SRR8316895	Juvenile bud stage	11.256
	SRR8316896	Juvenile bud stage	4.229
	SRR8316897	Juvenile bud stage	2.637
	SRR8316894	Third green stage	1.697
	SRR8316900	Third green stage	0.416
	SRR8316901	Third green stage	1.506
	SRR8316898	Complete white stage	0.740
	SRR8316899	Complete white stage	18.595
	SRR8316903	Complete white stage	10.097
	SRR8316902	Silver flowering stage	0.575
	SRR8316904	Silver flowering stage	1.762
	SRR8316905	Silver flowering stage	0.248
	SRR8316906	Gold flowering stage	1.472
	SRR8316907	Gold flowering stage	2.992
	SRR8316908	Gold flowering stage	3.123
SRP132670	SRR6706286	Control	1.501
	SRR6706287	Light intensity 50%	1.896
	SRR6706288	Light intensity 20%	1.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.148
	CNS0095593	Slightly white alabastrum(diploid) 2	6.470
	CNS0095594	Slightly white alabastrum(diploid) 3	12.026
	CNS0095595	Whole white alabastrum(diploid) 2	8.128
	CNS0095596	Whole white alabastrum(diploid) 3	1.303
	CNS0095597	Whole white alabastrum(diploid) 4	12.402
	CNS0095598	Silvery flower (diploied) 1	43.800
	CNS0095599	Silvery flower (diploied) 2	46.121
	CNS0095600	Silvery flower (diploied) 3	13.615
	CNS0095601	Golden flower (diploid) 1	47.971
	CNS0095602	Golden flower (diploid) 2	37.235
	CNS0095603	Golden flower (diploid) 3	38.718
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.656
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.717
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.374
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.088
	CNS0095610	Silvery flower (tetraploid) 1	2.624
	CNS0095611	Silvery flower (tetraploid) 2	11.799
	CNS0095612	Silvery flower (tetraploid) 3	6.478
	CNS0095613	Golden flower (tetraploid) 1	0.371
	CNS0095614	Golden flower (tetraploid) 2	4.068
	CNS0095615	Golden flower (tetraploid) 3	0.954
CRA001975	CRR073297	Stem 1	20.842
	CRR073298	Stem 2	19.957
	CRR073299	Stem 3	27.865
	CRR073300	Leaf 1	1.375
	CRR073301	Leaf 2	2.451
	CRR073302	Leaf 3	2.591
	CRR073303	Juvenile bud 1	0.760
	CRR073304	Juvenile bud 2	1.646
	CRR073305	Juvenile bud 3	1.486
	CRR073306	Third green 1	0.292
	CRR073307	Third green 2	0.419
	CRR073308	Third green 3	0.821
	CRR073309	Second white 1	0.235
	CRR073310	Second white 2	0.566
	CRR073311	Second white 3	0.556
	CRR073312	Silver flowering 1	0.565
	CRR073313	Silver flowering 2	1.214
	CRR073314	Silver flowering 3	0.621
	CRR073315	Gold flowering 1	14.576
	CRR073316	Gold flowering 2	28.413
	CRR073317	Gold flowering 3	37.294
	CRR073318	Tawny withering 1	7.973
	CRR073319	Tawny withering 2	39.095
	CRR073320	Tawny withering 3	3.784