Detail information of GWHGAAZE031517


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08645.16.3612E-135unnamed protein product [Coffea canephora]
Swissprottr|P92964|SRS31_ARATH6E-107Serine/arginine-rich splicing factor RS31
trEMBLtr|A0A068UJD0|A0A068UJD0_COFCA2E-135Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313|EMBL:CDP08645.1}
TAIR10AT3G61860.12E-77RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6011406660117318-
GWHAAZE00000009mRNA6011406660117318-
GWHAAZE00000009exon6011722660117318-
GWHAAZE00000009exon6011700460117133-
GWHAAZE00000009exon6011494860115096-
GWHAAZE00000009exon6011462660114855-
GWHAAZE00000009exon6011406660114315-
GWHAAZE00000009five_prime_UTR6011722660117318-
GWHAAZE00000009five_prime_UTR6011711060117133-
GWHAAZE00000009CDS6011700460117109-
GWHAAZE00000009CDS6011494860115096-
GWHAAZE00000009CDS6011462660114855-
GWHAAZE00000009CDS6011406660114315-
Transcript Sequence

Network for GWHGAAZE031517

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_14718.20E-14
PF00076.23RRM_11071697.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12893SFRS4_5_6 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.730
SRR3591706second leaf15.388
SRR3591707mature leaf30.991
SRR3591708Shoot apex30.954
SRR3591709Stem24.800
SRR3591710White floral bud20.568
SRR3591711White flower23.597
SRR3591712Green floral bud20.924
SRR3591713Yellow flower17.989
SRP173429 SRR8316895Juvenile bud stage 22.924
SRR8316896Juvenile bud stage 26.915
SRR8316897Juvenile bud stage 15.621
SRR8316894Third green stage 10.164
SRR8316900Third green stage 23.551
SRR8316901Third green stage 26.159
SRR8316898Complete white stage 7.071
SRR8316899Complete white stage 34.533
SRR8316903Complete white stage 16.301
SRR8316902Silver flowering stage11.951
SRR8316904Silver flowering stage14.618
SRR8316905Silver flowering stage6.974
SRR8316906Gold flowering stage 14.621
SRR8316907Gold flowering stage 17.393
SRR8316908Gold flowering stage 19.643
SRP132670SRR6706286Control38.537
SRR6706287Light intensity 50%35.955
SRR6706288Light intensity 20%37.693
CNP0000432CNS0095592Slightly white alabastrum(diploid) 135.180
CNS0095593Slightly white alabastrum(diploid) 232.955
CNS0095594Slightly white alabastrum(diploid) 326.381
CNS0095595Whole white alabastrum(diploid) 225.391
CNS0095596Whole white alabastrum(diploid) 322.021
CNS0095597Whole white alabastrum(diploid) 422.805
CNS0095598Silvery flower (diploied) 146.347
CNS0095599Silvery flower (diploied) 241.878
CNS0095600Silvery flower (diploied) 327.601
CNS0095601Golden flower (diploid) 139.394
CNS0095602Golden flower (diploid) 224.580
CNS0095603Golden flower (diploid) 324.259
CNS0095604Slightly white alabastrum(tetraploid) 135.024
CNS0095605Slightly white alabastrum(tetraploid) 231.318
CNS0095606Slightly white alabastrum(tetraploid) 351.967
CNS0095607Whole white alabastrum(tetraploid) 122.010
CNS0095608Whole white alabastrum(tetraploid) 216.710
CNS0095609Whole white alabastrum(tetraploid) 335.167
CNS0095610Silvery flower (tetraploid) 136.396
CNS0095611Silvery flower (tetraploid) 229.899
CNS0095612Silvery flower (tetraploid) 321.618
CNS0095613Golden flower (tetraploid) 123.379
CNS0095614Golden flower (tetraploid) 228.406
CNS0095615Golden flower (tetraploid) 312.485
CRA001975CRR073297Stem 133.119
CRR073298Stem 230.917
CRR073299Stem 336.246
CRR073300Leaf 134.727
CRR073301Leaf 234.886
CRR073302Leaf 329.551
CRR073303Juvenile bud 130.499
CRR073304Juvenile bud 219.453
CRR073305Juvenile bud 328.869
CRR073306Third green 16.493
CRR073307Third green 25.899
CRR073308Third green 37.139
CRR073309Second white 12.628
CRR073310Second white 23.101
CRR073311Second white 32.401
CRR073312Silver flowering 11.985
CRR073313Silver flowering 21.774
CRR073314Silver flowering 32.304
CRR073315Gold flowering 118.405
CRR073316Gold flowering 223.223
CRR073317Gold flowering 317.227
CRR073318Tawny withering 127.761
CRR073319Tawny withering 224.264
CRR073320Tawny withering 325.742