Gene detail

Detail information of GWHGAAZE031516

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007051491.1	0	No lysine kinase 6, putative [Theobroma cacao]
COG	YP_001278196.1	7E-17	protein kinase
Swissprot	tr\|Q6EU49\|WNK4_ORYSJ	0	Probable serine/threonine-protein kinase WNK4
trEMBL	tr\|A0A061E085\|A0A061E085_THECC	0	No lysine kinase 6, putative {ECO:0000313\|EMBL:EOX95648.1}
TAIR10	AT3G18750.3	4E-153	with no lysine (K) kinase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60090318	60093402	+
GWHAAZE00000009	mRNA	60090318	60093402	+
GWHAAZE00000009	exon	60090318	60090583	+
GWHAAZE00000009	exon	60090677	60090897	+
GWHAAZE00000009	exon	60090988	60091145	+
GWHAAZE00000009	exon	60091764	60092154	+
GWHAAZE00000009	exon	60092601	60093040	+
GWHAAZE00000009	exon	60093118	60093402	+
GWHAAZE00000009	CDS	60090318	60090583	+
GWHAAZE00000009	CDS	60090677	60090897	+
GWHAAZE00000009	CDS	60090988	60091145	+
GWHAAZE00000009	CDS	60091764	60092154	+
GWHAAZE00000009	CDS	60092601	60093040	+
GWHAAZE00000009	CDS	60093118	60093402	+

Transcript Sequence
>GWHTAAZE031552 ATGGATCCTTCTGCATTGGTTCCCTTTCTTGTTTGTAGCTATAGAGCCTTTGACCGACTTGACGGAATAGAAGTTGCCTGGAACCGGGTGAAGATTGATGATGTGTTGCAGTCACCAGAGGATTTGGAAAAATTATATACAGAAGTTCATCTTCTTAGATCATTGAAACATGAAAATATAATGAAGTTCTTTGAGTCATGGATTGATGAGAAAAAGAAGACTGTTAACATGATAACCGAGCTCTTCACATCCGGGAGCCTGAGACAATATCGTAATAAGCATAAAAGTGTCGATATGAAGGCTATAAAGAATTGGGCAAGGCAGATTCTTCGCGGTTTAGACTATCTTCATAGTCAGAACCCACCTGTCATCCATAGGGACTTGAAGTGTGACAATATTTTTGTTAATGGAAATCATGGAGAGGTTAAAATCGGAGACCTTGGATTGGCAACTGTTATGCAGCAGCCTACTGCTAAGAGTGTTATTGGTACCCCAGAATTCATGGCACCAGAGCTATACGAAGAGAATTATAACGAGCTAGTTGACATATATTCTTTTGGGATGTGCATGTTGGAAATGGTTACTTTCGAGTATCCTTATTGCGAGTGCAAGAATCCTGCTCAAATCTATAAGAAAGTTACTTCTGGAATTAAGCCTGCTTCCCTGGCCAAGGTTACTGATCCAAAAGTTAAAGAATTCATTGAGAAATGTCTGGTTCCAGCGTCTGAAAGATTGCCTGCTAGGGAGCTTCTAAAAGATCCTTTTCTTCAACTTGAGAATCCAAAGGAGCCAATTCGTAATCCGTTATTGCTACCGAACCAAATTCTAGCATCATTAAGCTCATTGAATTTCGGTCCTCTTTCCATGGATATAGATTCTGAGTACAACCAGTCTGTATGTACAGAGTCCAATTGTGGAAGCCCATCTCTGGTTTTCGAATTCCAGAGAATGCACCAGAATAATGAATTTAGGTTGAGAGGGAAGAAGAACGATGACAACTCAATTTCATTGACTCTACGAATTGCTGACCCATGTGGCCGAGTGAGGAACATACATTTTCTCTTCTACCTCGACAGTGATACTGCACTCTCAGTGGCTGGTGAGATGGTTGAACAGTTGGAGTTAGCAGACCATGACGTGGCTTTCATTGCTGAGTTTATCGACTACCTAATAAAGAGAATTCTCCCTGGTTGGAAACCCTCTTCCGATTATCAATCCAGCGAAGGGAGAAGCACATGTGAAGCGATTCCACCAAATGATTTAGCCTCAATATCCCATCCTTGGGATACACAAGGTTGTATTCAACCCGATGAAAGTAACTTGTATGGAAATTCTGACATTTTATCTCCAGTCAATATGACGAGTATGGGGAACATGGAAGATAAAGAATCGCAAGCATCAATTGTCTCTGAGGTAATGGGTGAAAACCCGTCCCCAAGAATGATAAAAATGGCGGGGGTTGCATTTACTACAATGGGAAATGAAAACCATGTTGGTGAATGCGGACCAATTAATGGGAACTCAGATTTGACGTATGCGGATTTGAACGGATTTTCGAAAGTTATGAGCTTGATGAGTAACGGGTCATCATCTGTGTCATTAACCGGAGAGCAAGATGAGGAGATTGACCTGAAGATGGAGCTTGATGCAATTGATGCACAATATCAAGAGTGGTTTCAAGAACTGTCGAGGACGAGAGAGGAGGCAATGGAGGCGGTTAGGAAGAGATGGATGACAAAGAAGCAGCTGCGTGTTCATTGA

Network for GWHGAAZE031516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	14	256	3.30E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.566
	SRR3591706	second leaf	6.957
	SRR3591707	mature leaf	6.405
	SRR3591708	Shoot apex	18.117
	SRR3591709	Stem	24.586
	SRR3591710	White floral bud	25.527
	SRR3591711	White flower	16.419
	SRR3591712	Green floral bud	38.661
	SRR3591713	Yellow flower	9.485
SRP173429	SRR8316895	Juvenile bud stage	22.855
	SRR8316896	Juvenile bud stage	42.767
	SRR8316897	Juvenile bud stage	18.848
	SRR8316894	Third green stage	14.265
	SRR8316900	Third green stage	40.341
	SRR8316901	Third green stage	37.460
	SRR8316898	Complete white stage	4.427
	SRR8316899	Complete white stage	14.612
	SRR8316903	Complete white stage	9.082
	SRR8316902	Silver flowering stage	6.870
	SRR8316904	Silver flowering stage	8.796
	SRR8316905	Silver flowering stage	4.157
	SRR8316906	Gold flowering stage	12.627
	SRR8316907	Gold flowering stage	14.362
	SRR8316908	Gold flowering stage	20.199
SRP132670	SRR6706286	Control	7.423
	SRR6706287	Light intensity 50%	8.631
	SRR6706288	Light intensity 20%	8.411
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.851
	CNS0095593	Slightly white alabastrum(diploid) 2	39.970
	CNS0095594	Slightly white alabastrum(diploid) 3	55.773
	CNS0095595	Whole white alabastrum(diploid) 2	54.773
	CNS0095596	Whole white alabastrum(diploid) 3	68.005
	CNS0095597	Whole white alabastrum(diploid) 4	65.993
	CNS0095598	Silvery flower (diploied) 1	13.112
	CNS0095599	Silvery flower (diploied) 2	11.744
	CNS0095600	Silvery flower (diploied) 3	13.519
	CNS0095601	Golden flower (diploid) 1	12.433
	CNS0095602	Golden flower (diploid) 2	11.426
	CNS0095603	Golden flower (diploid) 3	11.211
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.297
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.861
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.087
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	71.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.565
	CNS0095610	Silvery flower (tetraploid) 1	16.095
	CNS0095611	Silvery flower (tetraploid) 2	16.038
	CNS0095612	Silvery flower (tetraploid) 3	20.511
	CNS0095613	Golden flower (tetraploid) 1	12.497
	CNS0095614	Golden flower (tetraploid) 2	13.977
	CNS0095615	Golden flower (tetraploid) 3	12.417
CRA001975	CRR073297	Stem 1	31.442
	CRR073298	Stem 2	23.258
	CRR073299	Stem 3	19.200
	CRR073300	Leaf 1	25.894
	CRR073301	Leaf 2	23.935
	CRR073302	Leaf 3	14.693
	CRR073303	Juvenile bud 1	21.528
	CRR073304	Juvenile bud 2	10.265
	CRR073305	Juvenile bud 3	10.280
	CRR073306	Third green 1	9.786
	CRR073307	Third green 2	11.310
	CRR073308	Third green 3	9.873
	CRR073309	Second white 1	8.901
	CRR073310	Second white 2	11.195
	CRR073311	Second white 3	9.805
	CRR073312	Silver flowering 1	9.868
	CRR073313	Silver flowering 2	11.227
	CRR073314	Silver flowering 3	8.594
	CRR073315	Gold flowering 1	11.753
	CRR073316	Gold flowering 2	9.588
	CRR073317	Gold flowering 3	6.694
	CRR073318	Tawny withering 1	25.331
	CRR073319	Tawny withering 2	25.544
	CRR073320	Tawny withering 3	24.461