Gene detail

Detail information of GWHGAAZE031511

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010661956.1	PREDICTED: auxin response factor 18 [Vitis vinifera]
Swissprot	tr\|Q9XED8\|ARFI_ARATH	Auxin response factor 9
trEMBL	tr\|F6I6F3\|F6I6F3_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT2G46530.1	auxin response factor 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59996161	60001440	+
GWHAAZE00000009	mRNA	59996161	60001440	+
GWHAAZE00000009	exon	59996161	59996224	+
GWHAAZE00000009	exon	59996524	59996639	+
GWHAAZE00000009	exon	59996753	59996848	+
GWHAAZE00000009	exon	59996942	59996998	+
GWHAAZE00000009	exon	59997128	59997280	+
GWHAAZE00000009	exon	59997397	59997481	+
GWHAAZE00000009	exon	59997589	59997679	+
GWHAAZE00000009	exon	59997757	59997921	+
GWHAAZE00000009	exon	59998025	59998138	+
GWHAAZE00000009	exon	59998223	59998295	+
GWHAAZE00000009	exon	59998389	59998536	+
GWHAAZE00000009	exon	59998763	59999307	+
GWHAAZE00000009	exon	59999756	59999943	+
GWHAAZE00000009	exon	60000048	60000196	+
GWHAAZE00000009	exon	60001355	60001440	+
GWHAAZE00000009	CDS	59996161	59996224	+
GWHAAZE00000009	CDS	59996524	59996639	+
GWHAAZE00000009	CDS	59996753	59996848	+
GWHAAZE00000009	CDS	59996942	59996998	+
GWHAAZE00000009	CDS	59997128	59997280	+
GWHAAZE00000009	CDS	59997397	59997481	+
GWHAAZE00000009	CDS	59997589	59997679	+
GWHAAZE00000009	CDS	59997757	59997921	+
GWHAAZE00000009	CDS	59998025	59998138	+
GWHAAZE00000009	CDS	59998223	59998295	+
GWHAAZE00000009	CDS	59998389	59998536	+
GWHAAZE00000009	CDS	59998763	59999307	+
GWHAAZE00000009	CDS	59999756	59999943	+
GWHAAZE00000009	CDS	60000048	60000195	+
GWHAAZE00000009	three_prime_UTR	60000196	60000196	+
GWHAAZE00000009	three_prime_UTR	60001355	60001440	+

Transcript Sequence
>GWHTAAZE031547 ATGGATTTTGTTGATAGTATCAGAAGCTCTTCGGTTTCTCAAATAGGTGAAAGTGAAGAGTCAGGATTGGGAAGTGATGATCTGTTTACAGAGCTATGGAGGGCATGTGCTGGGCCTCTGGTTGATGTTCCTCATAGGGGAGAAAGAGTTTTTTACTTCCCCCAAGGTCACATGGAACAACTAGAGGCATCATTAAATCAAGAACTGAATCAACAAATCCCCCAGTTTAATCTCCCTTCTAAGATCCTTTGTCGGGTTGTTCACATTCAGTTACTGGCAGAACCAGAAACAGATGAAGTGTATGCACAAATTACCTTGCACCCAGAAGTAGAGCAAATTGAACCTACAAAGCCTGATCCGAGCCCTCCTGATAAACCGAAGAGGACGATTCATTCATTTTGTAAGATTTTAACCGCGTCGGATACAAGCACTCATGGAGGTTTCTCTGTTCTTCGGAAGCACGCGAATGAATGCTTGCCTCCATTGGACATGAACCAAGCAACTCCAACCCAGGATTTGGTTGCAAAAGATCTTCATGGGTACGAGTGGCGATTTAAACATATATTCAGAGGTCAACCCCGTAGACATTTGCTTACAACAGGATGGAGTACGTTTGTGACTTCGAAGAGATTAGTTGCTGGGGATGCTTTTGTTTTTCTCCGAGGTGATAATGGGGAATTGCGTGTTGGGGTTCGGCGTCTTGCTCGGCAACAAAGCCCCATGCCTCCTTCTGTCATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCAACTGCGTCTCATGCTATTACTACGCAAACCCTCTTTCTTGTTTATTACAAGCCGAGAACAAGCCAATTTATCATCGGCCTGAACAAATATCTGGAGGCAGCTCGATGTGGTTTTTCAGTTGGCATGCGGTTCAGGATGAGATTTGAGGGAGAAGATTCTCCAGAGAGAAGGTTTACCGGCACTATAGTTGGGGTTGGAGATTTTTCTCCACAGTGGTCGGATTCTAAATGGCGGTCATTGAAGGTTCAATGGGATGAACCTGCCAGCATTCCAAGGCCAGAGAGGGTTTCCCCATGGGAGATTGAGCCTTACGTAGCTTCCGCATCGTTAGAGCTAACCCCACCGGCAATGAAGAGCAAAAGACCCCGCCCCATTGATCTTCCACTTGCCGAAAATACTACTAGTTCTGCTGGTGCACCTTTCTGGTATCCGAGTTCAACCACACCGCATGAGTTGAACCACTTAGGCTCTACTACTGAAGTCCAATCCCACCCTGAAGGCATTTGGCCAAGTTCTTTGAACTTGTTTCGAGACTCTACAAGTGACAATAAAAATGTATCAGCTCGACCAAATCCTCTTTCTGATTATAACTCGCCTGTCTCATCAAGGGCTAGTAATGGACACGCACTCGACCAACAGGAAAGGGCAAAAAAGTCCGAGATCTGTACTGGTTACAGGTTGTTTGGTATTGATTTGAGAAGCAGCTCCAACAATAACAACCTTCCACCTCAAGAGAAGGAACTGGTTGGTTCAAAAATTGTGGCCAATAATAGCACCATATGCCCATCTCTGGTTAATACTCCCAAAGCTGACAAAGTTCAAAATTTGGACAGTTCTAAGTCCTTGAAAGAAAAGAAGCAAATCCCATTAGAGGCAACACAGAAGGAAGCACAGAGCAAGCAAGGTTGCACTACTTTGATTAGAACTCGTACAAAGGTGCAAATGCGAGGAGTTGCGGTCGGTCGTGCTGTTGACTTGACTGCATTGGAAGGGTACGATGACCTTATAACCGAGCTGGAGAAAATGTTTGAGATTAAAGGGGAGCTTCGCGTCCGCAACAAATGGGAAGTTGTTTACACTGATGACGAAGGGGACATGATGCTAGTGGGCGACGATCCTTGGCAGGAATTTTGTGAGATGGCCAGGAAGATTTTCATATATACAAGTGAGGAAGTGAGAAAGATGAACCCTAGAAGCAAGCTTCCATTGTCATCTTTAGAGGTTGAAGGAACAACAGCAAGCTTAGATTCAGAGCTAAAATCTGAAGCATGAGGCAAAGGTTGTTTTCATGAAGATTGCTTGCAATTAAAGGGAATTGGCTTTAGGTCTAGTGGAGTGGTGAATTGACTAATGAAAGGT

Network for GWHGAAZE031511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	133	233	7.60E-21
PF06507.14	Auxin_resp	259	338	3.80E-30
PF02309.17	AUX_IAA	540	601	5.10E-07
PF02309.17	AUX_IAA	611	655	4.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.325
	SRR3591706	second leaf	22.623
	SRR3591707	mature leaf	5.690
	SRR3591708	Shoot apex	148.042
	SRR3591709	Stem	40.777
	SRR3591710	White floral bud	7.116
	SRR3591711	White flower	12.806
	SRR3591712	Green floral bud	5.093
	SRR3591713	Yellow flower	10.724
SRP173429	SRR8316895	Juvenile bud stage	17.360
	SRR8316896	Juvenile bud stage	15.255
	SRR8316897	Juvenile bud stage	3.642
	SRR8316894	Third green stage	5.450
	SRR8316900	Third green stage	3.722
	SRR8316901	Third green stage	7.521
	SRR8316898	Complete white stage	1.528
	SRR8316899	Complete white stage	8.387
	SRR8316903	Complete white stage	3.073
	SRR8316902	Silver flowering stage	5.562
	SRR8316904	Silver flowering stage	7.877
	SRR8316905	Silver flowering stage	3.843
	SRR8316906	Gold flowering stage	20.172
	SRR8316907	Gold flowering stage	24.047
	SRR8316908	Gold flowering stage	18.624
SRP132670	SRR6706286	Control	5.886
	SRR6706287	Light intensity 50%	6.167
	SRR6706288	Light intensity 20%	5.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.576
	CNS0095593	Slightly white alabastrum(diploid) 2	13.557
	CNS0095594	Slightly white alabastrum(diploid) 3	14.823
	CNS0095595	Whole white alabastrum(diploid) 2	6.192
	CNS0095596	Whole white alabastrum(diploid) 3	3.534
	CNS0095597	Whole white alabastrum(diploid) 4	4.009
	CNS0095598	Silvery flower (diploied) 1	13.990
	CNS0095599	Silvery flower (diploied) 2	11.380
	CNS0095600	Silvery flower (diploied) 3	9.168
	CNS0095601	Golden flower (diploid) 1	9.726
	CNS0095602	Golden flower (diploid) 2	8.783
	CNS0095603	Golden flower (diploid) 3	7.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.353
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.926
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.370
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.314
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.267
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.567
	CNS0095610	Silvery flower (tetraploid) 1	12.289
	CNS0095611	Silvery flower (tetraploid) 2	8.917
	CNS0095612	Silvery flower (tetraploid) 3	6.439
	CNS0095613	Golden flower (tetraploid) 1	7.791
	CNS0095614	Golden flower (tetraploid) 2	11.208
	CNS0095615	Golden flower (tetraploid) 3	25.918
CRA001975	CRR073297	Stem 1	22.174
	CRR073298	Stem 2	16.216
	CRR073299	Stem 3	10.714
	CRR073300	Leaf 1	6.247
	CRR073301	Leaf 2	8.111
	CRR073302	Leaf 3	2.450
	CRR073303	Juvenile bud 1	1.383
	CRR073304	Juvenile bud 2	0.317
	CRR073305	Juvenile bud 3	4.182
	CRR073306	Third green 1	1.148
	CRR073307	Third green 2	0.530
	CRR073308	Third green 3	0.980
	CRR073309	Second white 1	4.153
	CRR073310	Second white 2	4.159
	CRR073311	Second white 3	7.798
	CRR073312	Silver flowering 1	8.108
	CRR073313	Silver flowering 2	6.604
	CRR073314	Silver flowering 3	4.390
	CRR073315	Gold flowering 1	1.383
	CRR073316	Gold flowering 2	3.118
	CRR073317	Gold flowering 3	1.641
	CRR073318	Tawny withering 1	19.953
	CRR073319	Tawny withering 2	21.710
	CRR073320	Tawny withering 3	18.210