Gene detail

Detail information of GWHGAAZE031466

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG21527.1	3.268E-168	Exosome complex component RRP41 [Gossypium arboreum]
COG	YP_184047.1	1E-72	exosome complex exonuclease Rrp41
Swissprot	tr\|Q84T68\|EXOS5_ORYSJ	2E-13	Exosome complex exonuclease RRP46 homolog
trEMBL	tr\|A0A061DSM8\|A0A061DSM8_THECC	1E-168	3'-5'-exoribonuclease family protein isoform 2 {ECO:0000313\|EMBL:EOX95794.1}
TAIR10	AT3G61620.2	2E-111	3'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59283622	59287146	+
GWHAAZE00000009	mRNA	59283622	59287146	+
GWHAAZE00000009	exon	59283622	59283716	+
GWHAAZE00000009	exon	59283844	59283890	+
GWHAAZE00000009	exon	59284003	59284063	+
GWHAAZE00000009	exon	59285144	59285182	+
GWHAAZE00000009	exon	59285264	59285331	+
GWHAAZE00000009	exon	59285507	59285585	+
GWHAAZE00000009	exon	59285682	59285718	+
GWHAAZE00000009	exon	59285820	59285936	+
GWHAAZE00000009	exon	59286283	59286368	+
GWHAAZE00000009	exon	59286887	59286976	+
GWHAAZE00000009	exon	59287099	59287146	+
GWHAAZE00000009	five_prime_UTR	59283622	59283662	+
GWHAAZE00000009	CDS	59283663	59283716	+
GWHAAZE00000009	CDS	59283844	59283890	+
GWHAAZE00000009	CDS	59284003	59284063	+
GWHAAZE00000009	CDS	59285144	59285182	+
GWHAAZE00000009	CDS	59285264	59285331	+
GWHAAZE00000009	CDS	59285507	59285585	+
GWHAAZE00000009	CDS	59285682	59285718	+
GWHAAZE00000009	CDS	59285820	59285936	+
GWHAAZE00000009	CDS	59286283	59286368	+
GWHAAZE00000009	CDS	59286887	59286976	+
GWHAAZE00000009	CDS	59287099	59287146	+

Transcript Sequence
>GWHTAAZE031502 TGAAGCATATCATAGCAACTTCTCTCTAAAGTTTTGCAGCAATGGAGTTTGTGAGCCCTGAAGGTCTTCGCTTAGATGGACGCCGTCCCATGGAGATGAGACAGCTTCGAGCGGAAATCGGCGCTGTTGCTAATGCTGATGGTTCTGCAGTTTTTGAAATGGGTAATACCAAAGTTGTTGCTGCAGTTTATGGTCCTAGAGAGGTCCAAAATAGGAGCCAACAGATTAATGATCAGGCCCTGGTACGGTGTGAATATAGCATGGCTAATTTCAGCACCGGAGATCGTATGAGAAAACCAAAGGGCGACAGGAGATCCACAGAGATATCTCTGGTGATTCGGCAGTCAATGGAAGCATGCATTATGACACACCTAATGCCTCGTTCTCAGATAGACATTTTTGTTCAAGTTCTCCAAGCAGATGGAGGAACAAGATCAGCATGCATAAATGCAGCAACATTGGCCCTTGCAGATGCTGGGATTCCGATGCGTGATCTCGTTACTTCCTGCAGTGCTGGATTCCTTAATAGCACTCCTCTGCTCGATCTAAACTATGTAGAAGATAGTGCTGGAGGCCCTGATGTCACTGTAGGCATTCTGCCTAAGTTGGACAAAGTGACTCTTTTGCAGATGGATGCTAAGTTACCTATTGATGTCTTCGAAAATGTCATGCAACTAGCTATGGAAGGCTGTAAGGCAGTGGCAAATTATATTCGAGAAGTATTACTAGAAAACACCAAGCAACTAGAGTATCGTCGCGGTTTATAG

Network for GWHGAAZE031466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	18	148	2.30E-38
PF03725.16	RNase_PH_C	151	216	2.40E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11600	RRP41, EXOSC4, SKI6	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.421
	SRR3591706	second leaf	36.856
	SRR3591707	mature leaf	28.772
	SRR3591708	Shoot apex	33.311
	SRR3591709	Stem	30.601
	SRR3591710	White floral bud	28.286
	SRR3591711	White flower	32.774
	SRR3591712	Green floral bud	30.473
	SRR3591713	Yellow flower	34.018
SRP173429	SRR8316895	Juvenile bud stage	21.242
	SRR8316896	Juvenile bud stage	32.318
	SRR8316897	Juvenile bud stage	14.071
	SRR8316894	Third green stage	13.803
	SRR8316900	Third green stage	29.939
	SRR8316901	Third green stage	34.582
	SRR8316898	Complete white stage	17.126
	SRR8316899	Complete white stage	48.576
	SRR8316903	Complete white stage	20.881
	SRR8316902	Silver flowering stage	12.246
	SRR8316904	Silver flowering stage	15.431
	SRR8316905	Silver flowering stage	6.328
	SRR8316906	Gold flowering stage	23.066
	SRR8316907	Gold flowering stage	25.684
	SRR8316908	Gold flowering stage	23.319
SRP132670	SRR6706286	Control	29.472
	SRR6706287	Light intensity 50%	29.628
	SRR6706288	Light intensity 20%	33.806
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.882
	CNS0095593	Slightly white alabastrum(diploid) 2	23.838
	CNS0095594	Slightly white alabastrum(diploid) 3	24.774
	CNS0095595	Whole white alabastrum(diploid) 2	19.239
	CNS0095596	Whole white alabastrum(diploid) 3	21.705
	CNS0095597	Whole white alabastrum(diploid) 4	18.706
	CNS0095598	Silvery flower (diploied) 1	24.539
	CNS0095599	Silvery flower (diploied) 2	15.989
	CNS0095600	Silvery flower (diploied) 3	24.176
	CNS0095601	Golden flower (diploid) 1	21.835
	CNS0095602	Golden flower (diploid) 2	20.211
	CNS0095603	Golden flower (diploid) 3	18.142
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.994
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.874
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.709
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.594
	CNS0095610	Silvery flower (tetraploid) 1	24.087
	CNS0095611	Silvery flower (tetraploid) 2	24.158
	CNS0095612	Silvery flower (tetraploid) 3	17.299
	CNS0095613	Golden flower (tetraploid) 1	18.161
	CNS0095614	Golden flower (tetraploid) 2	20.972
	CNS0095615	Golden flower (tetraploid) 3	18.943
CRA001975	CRR073297	Stem 1	35.112
	CRR073298	Stem 2	28.687
	CRR073299	Stem 3	23.223
	CRR073300	Leaf 1	31.742
	CRR073301	Leaf 2	34.791
	CRR073302	Leaf 3	25.212
	CRR073303	Juvenile bud 1	22.670
	CRR073304	Juvenile bud 2	17.115
	CRR073305	Juvenile bud 3	21.470
	CRR073306	Third green 1	5.720
	CRR073307	Third green 2	5.377
	CRR073308	Third green 3	7.268
	CRR073309	Second white 1	11.596
	CRR073310	Second white 2	12.739
	CRR073311	Second white 3	14.018
	CRR073312	Silver flowering 1	8.583
	CRR073313	Silver flowering 2	10.232
	CRR073314	Silver flowering 3	13.372
	CRR073315	Gold flowering 1	25.919
	CRR073316	Gold flowering 2	28.972
	CRR073317	Gold flowering 3	14.500
	CRR073318	Tawny withering 1	36.574
	CRR073319	Tawny withering 2	33.313
	CRR073320	Tawny withering 3	35.841