Detail information of GWHGAAZE031465


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011076034.12.3265E-105PREDICTED: ubiquitin-conjugating enzyme E2 28-like [Sesamum indicum]
COGYP_008797956.18E-25ubiquitin-conjugating enzyme E2-like protein
Swissprottr|Q94F47|UBC28_ARATH9E-106Ubiquitin-conjugating enzyme E2 28
trEMBLtr|A0A022PZG5|A0A022PZG5_ERYGU9E-106Uncharacterized protein {ECO:0000313|EMBL:EYU19615.1}
TAIR10AT1G64230.26E-83ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5927284459277035-
GWHAAZE00000009mRNA5927284459277035-
GWHAAZE00000009exon5927696659277035-
GWHAAZE00000009exon5927543859275565-
GWHAAZE00000009exon5927468559274789-
GWHAAZE00000009exon5927284459272987-
GWHAAZE00000009CDS5927696659277035-
GWHAAZE00000009CDS5927543859275565-
GWHAAZE00000009CDS5927468559274789-
GWHAAZE00000009CDS5927284459272987-
Transcript Sequence

Network for GWHGAAZE031465

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51417.10E-54
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf382.143
SRR3591706second leaf199.601
SRR3591707mature leaf186.126
SRR3591708Shoot apex373.266
SRR3591709Stem440.129
SRR3591710White floral bud332.790
SRR3591711White flower289.714
SRR3591712Green floral bud451.367
SRR3591713Yellow flower252.602
SRP173429 SRR8316895Juvenile bud stage 208.724
SRR8316896Juvenile bud stage 325.622
SRR8316897Juvenile bud stage 153.212
SRR8316894Third green stage 132.207
SRR8316900Third green stage 367.956
SRR8316901Third green stage 406.132
SRR8316898Complete white stage 157.922
SRR8316899Complete white stage 523.285
SRR8316903Complete white stage 221.752
SRR8316902Silver flowering stage92.172
SRR8316904Silver flowering stage114.947
SRR8316905Silver flowering stage55.109
SRR8316906Gold flowering stage 139.169
SRR8316907Gold flowering stage 155.599
SRR8316908Gold flowering stage 155.385
SRP132670SRR6706286Control424.752
SRR6706287Light intensity 50%421.270
SRR6706288Light intensity 20%484.947
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1424.643
CNS0095593Slightly white alabastrum(diploid) 2471.144
CNS0095594Slightly white alabastrum(diploid) 3397.077
CNS0095595Whole white alabastrum(diploid) 2435.312
CNS0095596Whole white alabastrum(diploid) 3422.005
CNS0095597Whole white alabastrum(diploid) 4420.376
CNS0095598Silvery flower (diploied) 1286.806
CNS0095599Silvery flower (diploied) 2247.773
CNS0095600Silvery flower (diploied) 3225.402
CNS0095601Golden flower (diploid) 1290.408
CNS0095602Golden flower (diploid) 2271.481
CNS0095603Golden flower (diploid) 3267.205
CNS0095604Slightly white alabastrum(tetraploid) 1407.835
CNS0095605Slightly white alabastrum(tetraploid) 2370.305
CNS0095606Slightly white alabastrum(tetraploid) 3410.154
CNS0095607Whole white alabastrum(tetraploid) 1341.999
CNS0095608Whole white alabastrum(tetraploid) 2360.002
CNS0095609Whole white alabastrum(tetraploid) 3341.942
CNS0095610Silvery flower (tetraploid) 1187.664
CNS0095611Silvery flower (tetraploid) 2205.170
CNS0095612Silvery flower (tetraploid) 3153.956
CNS0095613Golden flower (tetraploid) 1203.961
CNS0095614Golden flower (tetraploid) 2210.619
CNS0095615Golden flower (tetraploid) 3190.965
CRA001975CRR073297Stem 1207.801
CRR073298Stem 2204.126
CRR073299Stem 3218.940
CRR073300Leaf 1273.353
CRR073301Leaf 2285.913
CRR073302Leaf 3249.640
CRR073303Juvenile bud 1265.805
CRR073304Juvenile bud 2223.358
CRR073305Juvenile bud 3221.430
CRR073306Third green 186.224
CRR073307Third green 2113.366
CRR073308Third green 3108.730
CRR073309Second white 169.654
CRR073310Second white 262.054
CRR073311Second white 344.887
CRR073312Silver flowering 162.500
CRR073313Silver flowering 257.165
CRR073314Silver flowering 348.352
CRR073315Gold flowering 184.706
CRR073316Gold flowering 275.503
CRR073317Gold flowering 381.727
CRR073318Tawny withering 1202.645
CRR073319Tawny withering 2228.769
CRR073320Tawny withering 3232.562