Gene detail

Detail information of GWHGAAZE031460

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280598.2	0	PREDICTED: mitogen-activated protein kinase kinase kinase 7 [Vitis vinifera]
COG	YP_006180537.1	4E-16	serine/threonine protein kinase PrkC
Swissprot	tr\|P25848\|PHY1_CERPU	3E-40	Protein kinase
trEMBL	tr\|A5AHW7\|A5AHW7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60248.1}
TAIR10	AT5G41730.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59214716	59217582	-
GWHAAZE00000009	mRNA	59214716	59217582	-
GWHAAZE00000009	exon	59215662	59217582	-
GWHAAZE00000009	exon	59214716	59215066	-
GWHAAZE00000009	CDS	59215662	59217582	-
GWHAAZE00000009	CDS	59214921	59215066	-
GWHAAZE00000009	three_prime_UTR	59214716	59214920	-

Transcript Sequence
>GWHTAAZE031496 ATGGAAGAGTTGAGGCATACTGGAGAGGTAATTGGGAGTTTAACGGCTTTGATGGTATTCAAAGGCGAAATCCAAATTAATCAGAAGCAGTGTTGTTTATTGTTCGATATGTTTGATTCGGCTTACAAATCAATCACTGAGGAGATTAAACAGAACCTCGAGTTTGAAGAGAGACAAACAAAATGGAAAGTTCTTGAGCAGCCATTAAGAGAGCTCTACAAGGTGTTTAAAGAAGGAGAGCTTTACATAAGGCAGTGTTTGGAAACAAGGGACTGGTTAGCTAAAGCTATTACCCTTTATCAGAACAAGGACTGTGTTGAGTTTCACATACACAACTTGTTCTGCTGCATTTTTGTCTTGATCGAAGCCATCGAAAATGCTGGAGAGATTTCGGGGTTGGACCAAGAGGAGATTCAGAAAAGGAGAGCGGTGTATTCGATGAAGTATCAAAAAGAATTTAGAGACCCTAAATTGTTCCAATGGAGATTTGGAAAGCAATACCTGGCCTCCGAGGATATCTGTAATAGGATAAGTTCTGTTTGGGAAGAAGATAGAAGCTTTCTCCTGAAGAAAATTCAAGAGAAAAGGAATTTGGGTTCATCGGCCTCCATGAAGCAAGAGAGGCAGCTAAAGGACCTTCTGTTCAAGAACTTAAGTGGGTCCGAGCCATTGCATGCTAAGCTCTTACCGTCTAAGATCTTAGTGGGTTCAAATGATTTCCAAGTGAAGAGGCGATTAGGGACCAGTAGCCACTACAAGGAGATTCAGTGGCTAGGCGAAAGCTTTGCTCTAAGGCACTTTTTCGGGAACATTGAGCCACTAATTCCCGAGATTACACAAGAATTCAATCTTTCACATCCAAATATAATGCACGTATTTTGTGGGTTCACAGACGAGGAAAAGAAAGAGTGTTTTCTTGTTATGGAACTCATGAATCGAGATCTCACGGGCTATATAAAAGAGGCTTGTTTCCCAAAGAAAAAGGTTTCATTTTCCCTTCCTGTTTCAGTTGATCTTATGCTTCAGATTGCAAGAGGAATGGAATATCTCCACTCGAAGAAAATTTACCACGGGGACCTGAACCCTTCAAATGTCCTCATAAAAGCAAGAAGCAATTCCTTGGACGGTTACTTGCATGCAAAAGTTGCAGGATTTGGCCTATCATCCTCTATTAGCCCGACTCTGAAAGCCTCTTCGAATCAAAACAACGGGACCCTTCCATTCATATGGTATCCTCCTGAAGTATTAGCTGAGCAAGAACAAATGGGAAGTATAGGGAATTTGAAGAACACGGAAAAGTGCGATGTGTATAGCTTTGGGATGATTTGCTTTCAGCTATTGACCGGTAAAGTCCCTTTTGAGGATGGCCACCTTCAAGGAGATAAAATGGGCCGAAATATTCGGACGGGCGAGAGACCACTGTTCCCTCATAATTCGCCTAAATATTTGACCAATTTGACAAAAAAATGCTGGCATAGTGATCCCAATCAAAGGCCGAGTTTCTCATCTATTTGTAGAATTCTACGATGCATAAAGCGGTTCTTGATTATAAATCCTGATCAAAGTCAACCGGACCCACCAATGCCACGGGTGGATTATGCGGAAATCGAAGCAGGGTTACTCAAGAACTTCCCTAATTGGGGAAGTTCCAATTTATTACCGGTTACACAAATCCCATTTCAAATGTTTGCTTGTAGAGTAGCGGAGAAGGAGAAAATGAATGGAACAAGTAGTCATAAAGAACCTTCAGAATCGGGGAGTGATAAATCTTCGGCCTGTGGGGACGAGAATGTGATTGATAATGATCAATTCATCTCGTTGGTTGAAAAGAAGCCTTTGATATCTGCAGAAACTTTGGTCAAGAAACTTGCATCGAGGAAGTCCTTAGATGGGACTGGGAGAGTCAACAACAAACAGACAGGGACACCGAGATCTAGGTCACTAAGACCGCCCCAAACGAGTCCTTCTGGTCGCAATATGAGGATGAATTCCGAAAGCCAGCTGATTGTGAGGAGTCCAAAACCGAGGCGATTATCCGGTCATGCCTCGGATTCCGAACTCTGCTAGGCCCCTATCTCGGCATACTAGCTGATGATTTCATCAAGAAATTTACCCGCATTGGATATATTGACGTATTTATATAAAGATTGTTAGATTCGAATAGTTAGTTCATCATTTGTAAATAATGCATGTCTCATTAAAGAAACTTTATAGGGTAGGTGCAGTTTATGTTACATGGACCAGCCGATTATGTAAAATACATGAACAAGTT

Network for GWHGAAZE031460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06760.12	DUF1221	22	237	1.20E-99
PF07714.18	PK_Tyr_Ser-Thr	282	507	6.50E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_Gdt

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.083
	SRR3591706	second leaf	0.055
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.091
	SRR3591709	Stem	0.060
	SRR3591710	White floral bud	1.098
	SRR3591711	White flower	0.128
	SRR3591712	Green floral bud	1.323
	SRR3591713	Yellow flower	0.274
SRP173429	SRR8316895	Juvenile bud stage	1.633
	SRR8316896	Juvenile bud stage	7.890
	SRR8316897	Juvenile bud stage	1.467
	SRR8316894	Third green stage	1.797
	SRR8316900	Third green stage	1.007
	SRR8316901	Third green stage	0.794
	SRR8316898	Complete white stage	0.019
	SRR8316899	Complete white stage	0.269
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.118
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.035
	SRR8316906	Gold flowering stage	0.230
	SRR8316907	Gold flowering stage	0.202
	SRR8316908	Gold flowering stage	0.195
SRP132670	SRR6706286	Control	0.418
	SRR6706287	Light intensity 50%	0.471
	SRR6706288	Light intensity 20%	0.203
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.198
	CNS0095593	Slightly white alabastrum(diploid) 2	0.350
	CNS0095594	Slightly white alabastrum(diploid) 3	1.951
	CNS0095595	Whole white alabastrum(diploid) 2	1.299
	CNS0095596	Whole white alabastrum(diploid) 3	1.371
	CNS0095597	Whole white alabastrum(diploid) 4	1.368
	CNS0095598	Silvery flower (diploied) 1	0.244
	CNS0095599	Silvery flower (diploied) 2	0.047
	CNS0095600	Silvery flower (diploied) 3	0.152
	CNS0095601	Golden flower (diploid) 1	0.110
	CNS0095602	Golden flower (diploid) 2	0.319
	CNS0095603	Golden flower (diploid) 3	0.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.444
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.603
	CNS0095610	Silvery flower (tetraploid) 1	0.144
	CNS0095611	Silvery flower (tetraploid) 2	0.068
	CNS0095612	Silvery flower (tetraploid) 3	0.173
	CNS0095613	Golden flower (tetraploid) 1	0.158
	CNS0095614	Golden flower (tetraploid) 2	0.142
	CNS0095615	Golden flower (tetraploid) 3	0.112
CRA001975	CRR073297	Stem 1	5.096
	CRR073298	Stem 2	7.611
	CRR073299	Stem 3	7.586
	CRR073300	Leaf 1	0.782
	CRR073301	Leaf 2	0.187
	CRR073302	Leaf 3	0.158
	CRR073303	Juvenile bud 1	1.130
	CRR073304	Juvenile bud 2	0.651
	CRR073305	Juvenile bud 3	0.070
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.165
	CRR073308	Third green 3	0.187
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.127
	CRR073311	Second white 3	0.023
	CRR073312	Silver flowering 1	0.123
	CRR073313	Silver flowering 2	0.173
	CRR073314	Silver flowering 3	0.023
	CRR073315	Gold flowering 1	0.259
	CRR073316	Gold flowering 2	0.215
	CRR073317	Gold flowering 3	0.147
	CRR073318	Tawny withering 1	0.152
	CRR073319	Tawny withering 2	0.119
	CRR073320	Tawny withering 3	0.360