Gene detail

Detail information of GWHGAAZE031434

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007051705.1	4.2357E-77	WRKY transcription factor 23, putative [Theobroma cacao]
Swissprot	tr\|O04609\|WRK22_ARATH	1E-61	WRKY transcription factor 22
trEMBL	tr\|A0A061DTY2\|A0A061DTY2_THECC	2E-77	WRKY transcription factor 23, putative {ECO:0000313\|EMBL:EOX95862.1}
TAIR10	AT4G01250.1	5E-45	WRKY family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58895934	58897038	+
GWHAAZE00000009	mRNA	58895934	58897038	+
GWHAAZE00000009	exon	58895934	58895992	+
GWHAAZE00000009	exon	58896104	58896214	+
GWHAAZE00000009	exon	58896606	58897038	+
GWHAAZE00000009	CDS	58895934	58895992	+
GWHAAZE00000009	CDS	58896104	58896214	+
GWHAAZE00000009	CDS	58896606	58897038	+

Transcript Sequence
>GWHTAAZE031470 TGTACAACTGCTAAAGCTCCTGGTACAAGGCTTGCCCAGCATCCGAGGTCCAAGAGAAGGAAGAATCAAATGAAGAGGGTTTGTCAAGTACCCGCTGAGGGTTTAACTTCAGATATGTGGTCTTGGAGAAAATATGGGCAAAAACCCATTAAGGGCTCTCCCTTCCCAAGGGGATATTACAGATGTAGCACTTCAAAGGGATGTTTGGCCCGAAAACAAGTGGAGCGGAACAGATCCGACCCGACCATGTTCATTGTCACCTACACCGGTGATCACAACCACCCTATGCCCACCCACAGGAACTCCCTCGCCGGCAGTACCCGCCCGAAAACTGTCACAGCCGATGATTCTAGCAAAACCTCTTCCTCCCCGCCAGTTTCACCAGCTGCAAGCCTCTCTCCGGCGACGGAAAACATGGAGAGCAAAGAAGAGAGAGAAGGCACTATGGAGGAAGATGATGATGATGATGATGAGTTTGGCTTCGTGAGTGATGATTTCTTCATGGGTTTGGAGGAAGTTGCCGGTCCAATAGGCGGAAATGGATTCTCAGACGAGTTCCCGGCGAGTTTGTTATTTACACCCACTGTTGCCGGCGGGGATTAA

Network for GWHGAAZE031434

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	38	95	2.70E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
K13425	WRKY22	MAPK signaling pathway - plant	map04016
K13425	WRKY22	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.177
	SRR3591706	second leaf	10.615
	SRR3591707	mature leaf	4.391
	SRR3591708	Shoot apex	22.963
	SRR3591709	Stem	29.251
	SRR3591710	White floral bud	5.744
	SRR3591711	White flower	9.647
	SRR3591712	Green floral bud	4.458
	SRR3591713	Yellow flower	4.834
SRP173429	SRR8316895	Juvenile bud stage	9.876
	SRR8316896	Juvenile bud stage	5.571
	SRR8316897	Juvenile bud stage	5.305
	SRR8316894	Third green stage	4.205
	SRR8316900	Third green stage	3.685
	SRR8316901	Third green stage	3.535
	SRR8316898	Complete white stage	0.405
	SRR8316899	Complete white stage	6.682
	SRR8316903	Complete white stage	1.474
	SRR8316902	Silver flowering stage	0.490
	SRR8316904	Silver flowering stage	0.250
	SRR8316905	Silver flowering stage	0.103
	SRR8316906	Gold flowering stage	1.419
	SRR8316907	Gold flowering stage	0.780
	SRR8316908	Gold flowering stage	1.056
SRP132670	SRR6706286	Control	2.175
	SRR6706287	Light intensity 50%	1.988
	SRR6706288	Light intensity 20%	1.806
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.251
	CNS0095593	Slightly white alabastrum(diploid) 2	8.642
	CNS0095594	Slightly white alabastrum(diploid) 3	12.031
	CNS0095595	Whole white alabastrum(diploid) 2	6.045
	CNS0095596	Whole white alabastrum(diploid) 3	1.190
	CNS0095597	Whole white alabastrum(diploid) 4	3.902
	CNS0095598	Silvery flower (diploied) 1	18.522
	CNS0095599	Silvery flower (diploied) 2	15.213
	CNS0095600	Silvery flower (diploied) 3	7.337
	CNS0095601	Golden flower (diploid) 1	16.091
	CNS0095602	Golden flower (diploid) 2	10.802
	CNS0095603	Golden flower (diploid) 3	9.769
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.612
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.212
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.823
	CNS0095610	Silvery flower (tetraploid) 1	0.648
	CNS0095611	Silvery flower (tetraploid) 2	0.421
	CNS0095612	Silvery flower (tetraploid) 3	1.549
	CNS0095613	Golden flower (tetraploid) 1	0.575
	CNS0095614	Golden flower (tetraploid) 2	0.762
	CNS0095615	Golden flower (tetraploid) 3	2.130
CRA001975	CRR073297	Stem 1	6.259
	CRR073298	Stem 2	4.577
	CRR073299	Stem 3	6.783
	CRR073300	Leaf 1	4.364
	CRR073301	Leaf 2	5.761
	CRR073302	Leaf 3	2.853
	CRR073303	Juvenile bud 1	2.796
	CRR073304	Juvenile bud 2	1.859
	CRR073305	Juvenile bud 3	4.990
	CRR073306	Third green 1	1.214
	CRR073307	Third green 2	1.133
	CRR073308	Third green 3	1.097
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	1.244
	CRR073311	Second white 3	0.279
	CRR073312	Silver flowering 1	0.682
	CRR073313	Silver flowering 2	4.555
	CRR073314	Silver flowering 3	0.170
	CRR073315	Gold flowering 1	5.662
	CRR073316	Gold flowering 2	8.078
	CRR073317	Gold flowering 3	8.612
	CRR073318	Tawny withering 1	4.423
	CRR073319	Tawny withering 2	13.874
	CRR073320	Tawny withering 3	5.138